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Sample GSM636 Query DataSets for GSM636
Status Public on Dec 17, 2001
Title Small Pre-BII cells 9
Sample type RNA
 
Source name Small Pre-BII cells
Organism Mus musculus
Extracted molecule total RNA
 
Description B220+CD25+sIg- Small Pre BII cells sorted out of mouse bone marrow, sort no. 9
 
Submission date Nov 27, 2001
Last update date May 27, 2005
Contact name Reinhard Hoffmann
E-mail(s) reinhard.hoffmann@lrz.tum.de
Phone +49-89-4140-4155
Organization name Institute for medical microbiology
Street address Trogerstr. 30
City Munich
ZIP/Postal code 81675
Country Germany
 
Platform ID GPL75
Series (2)
GSE13 Murine bone marrow B cell precursors
GSE272 T and B lymphocyte development profiles

Data table header descriptions
ID_REF Affymetrix probe set identifier
Experiment Name Experiment name
POSITIVE Number of positive probe pairs
NEGATIVE Number of negative probe pairs
PAIRS Number of probe set specific probe pairs on the array
PAIRS_USED Pairs used
PAIRS_IN_AVG Trimmed probe pair set
POS_FRACTION Positive/pairs used
Log Avg Log average
PM Excess Number of probe pairs where PM/MM exceeds the ratio limit (10 by default)
MM Excess Number of probe pairs where MM/PM exceeds 1/ratio limit (10 by default)
POS/NEG Positive/negative
VALUE Average difference intensity
ABS_CALL Whether a probe set is present, marginal, or absent; see Affymetrix Literature

Data table
ID_REF Experiment Name POSITIVE NEGATIVE PAIRS PAIRS_USED PAIRS_IN_AVG POS_FRACTION Log Avg PM Excess MM Excess POS/NEG VALUE ABS_CALL
IL2_at RHMu9SmaA 5 2 19 19 18 0.26 0.86 0 0 2.5 241 A
IL10_at RHMu9SmaA 5 2 20 20 20 0.25 0.38 0 0 2.5 127 A
GMCSF_at RHMu9SmaA 5 3 20 20 18 0.25 0.75 0 0 1.7 434 A
TNFRII_at RHMu9SmaA 6 2 20 20 19 0.3 0.87 0 0 3 363 A
MIP1-B_at RHMu9SmaA 3 5 20 20 19 0.15 0.34 0 0 0.6 1573 A
IL4_at RHMu9SmaA 1 4 20 20 19 0.05 -0.01 0 0 0.3 44 A
IL12_P40_at RHMu9SmaA 5 6 20 20 19 0.25 0.23 0 0 0.8 -176 A
TNFa_at RHMu9SmaA 3 5 20 20 20 0.15 -0.5 0 0 0.6 -206 A
TCRa_at RHMu9SmaA 3 4 20 20 19 0.15 -0.48 0 0 0.8 -336 A
AFFX-BioB-5_at RHMu9SmaA 6 7 20 20 19 0.3 0.65 1 0 0.9 3 A
AFFX-BioB-M_at RHMu9SmaA 2 3 20 20 18 0.1 0.74 1 0 0.7 15 A
AFFX-BioB-3_at RHMu9SmaA 5 4 20 20 19 0.25 -0.63 0 1 1.3 40 A
AFFX-BioC-5_at RHMu9SmaA 6 1 20 20 20 0.3 1.11 0 0 6 333 A
AFFX-BioC-3_at RHMu9SmaA 1 2 20 20 18 0.05 0.15 0 0 0.5 0 A
AFFX-BioDn-5_at RHMu9SmaA 0 3 20 20 20 0 -0.4 0 0 0 -185 A
AFFX-BioDn-3_at RHMu9SmaA 7 1 20 20 19 0.35 0.9 0 0 7 1187 A
AFFX-CreX-5_at RHMu9SmaA 12 0 20 20 19 0.6 2.46 0 0 Undef 1766 P
AFFX-CreX-3_at RHMu9SmaA 17 0 20 20 19 0.85 3.8 0 0 Undef 4310 P
AFFX-BioB-5_st RHMu9SmaA 4 5 20 20 18 0.2 -0.09 0 0 0.8 16 A
AFFX-BioB-M_st RHMu9SmaA 2 2 20 20 17 0.1 0.22 0 0 1 26 A

Total number of rows: 6584

Table truncated, full table size 383 Kbytes.




Supplementary data files not provided

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