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Sample GSM6360965 Query DataSets for GSM6360965
Status Public on Jul 22, 2022
Title No insomina disorder [930c13017]
Sample type RNA
 
Source name PBMCs
Organism Homo sapiens
Characteristics insomnia: no
age: 77
gender: male
race: white
education (years): 12
bmi: 36.03
comorbidity: 0
bdi: 2
bdins: 2
history of depression: yes
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from PMBC samples lysed in RLT buffer following the protocol from a QIAGEN RNeasy mini kit on a QIACube instrument and included DNase I treatment.
Label biotin
Label protocol Biotinylated cRNA were prepared with Ambion TotalPrep for Illumina arrays (carried out by UCLA Neuroscience Genomics Core).
 
Hybridization protocol Standard Illumina hybridization protocol (carried out by UCLA Neuroscience Genomics Core).
Scan protocol Standard Illumina scan protocol for gene expression profiling (carried out by UCLA Neuroscience Genomics Core).
Description Illumina HumanHT-12 v4.0 expression beadchip
Data processing Raw probe intensity values and quantile-normalized gene expression values were generated by Illumina GenomeStudio software using Gene Expression module 1.1.1. Data were then log2 transformed before analysis
 
Submission date Jul 20, 2022
Last update date Jul 22, 2022
Contact name Donald M. Lamkin
E-mail(s) dlamkin@ucla.edu
Organization name UCLA
Department Semel Institute for Neuroscience
Street address 300 UCLA Medical Plaza, Room 3160
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL10904
Series (1)
GSE208668 Sleep Disturbance and Activation of Cellular and Transcriptional Mechanisms of Inflammation in Older Adults

Data table header descriptions
ID_REF
VALUE quantile-normalized log2 gene expression values.

Data table
ID_REF VALUE
7A5 7.2908
A1BG 7.1842
A1CF 7.1304
A26C3 7.2469
A2BP1 7.0617
A2LD1 8.2142
A2M 7.1211
A2ML1 7.0831
A3GALT2 7.0887
A4GALT 6.9916
A4GNT 7.6073
AAA1 7.1526
AAAS 7.8315
AACS 7.506
AACSL 7.5913
AADAC 7.0892
AADACL1 8.8636
AADACL2 7.1456
AADACL3 7.2455
AADACL4 7.3463

Total number of rows: 33210

Table truncated, full table size 489 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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