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Sample GSM638 Query DataSets for GSM638
Status Public on Dec 17, 2001
Title Immature B cells 11b
Sample type RNA
 
Source name Immature B cells
Organism Mus musculus
Extracted molecule total RNA
 
Description B220Low sIgM+ immature B cells sorted out of mouse bone marrow, sort no. 11
 
Submission date Nov 27, 2001
Last update date May 27, 2005
Contact name Reinhard Hoffmann
E-mail(s) reinhard.hoffmann@lrz.tum.de
Phone +49-89-4140-4155
Organization name Institute for medical microbiology
Street address Trogerstr. 30
City Munich
ZIP/Postal code 81675
Country Germany
 
Platform ID GPL76
Series (2)
GSE13 Murine bone marrow B cell precursors
GSE272 T and B lymphocyte development profiles

Data table header descriptions
ID_REF Affymetrix probe set identifier
Experiment Name Experiment name
POSITIVE Number of positive probe pairs
NEGATIVE Number of negative probe pairs
PAIRS Number of probe set specific probe pairs on the array
PAIRS_USED Pairs used
PAIRS_IN_AVG Trimmed probe pair set
POS_FRACTION Positive/pairs used
Log Avg Log average
PM Excess Number of probe pairs where PM/MM exceeds the ratio limit (10 by default)
MM Excess Number of probe pairs where MM/PM exceeds 1/ratio limit (10 by default)
POS/NEG Positive/negative
VALUE Average difference intensity
ABS_CALL Whether a probe set is present, marginal, or absent; see Affymetrix Literature

Data table
ID_REF Experiment Name POSITIVE NEGATIVE PAIRS PAIRS_USED PAIRS_IN_AVG POS_FRACTION Log Avg PM Excess MM Excess POS/NEG VALUE ABS_CALL
IL2_at RHMu11ImmB 3 3 19 19 18 0.16 0.49 0 0 1.0 92 A
IL10_at RHMu11ImmB 7 2 20 20 18 0.35 1.66 0 0 3.5 297 P
GMCSF_at RHMu11ImmB 6 6 20 20 18 0.30 1.15 0 0 1.0 448 A
TNFRII_at RHMu11ImmB 4 4 20 20 18 0.20 0.35 0 0 1.0 62 A
MIP1-B_at RHMu11ImmB 5 5 20 20 18 0.25 0.34 0 0 1.0 502 A
IL4_at RHMu11ImmB 4 4 20 20 19 0.20 0.50 0 0 1.0 46 A
IL12_P40_at RHMu11ImmB 3 5 20 20 19 0.15 -0.32 0 0 0.6 -209 A
TNFa_at RHMu11ImmB 1 2 20 20 20 0.05 -0.23 0 0 0.5 -78 A
TCRa_at RHMu11ImmB 3 4 20 20 18 0.15 -0.70 0 0 0.8 -275 A
AFFX-BioB-5_at RHMu11ImmB 1 5 20 20 18 0.05 -0.79 0 0 0.2 -47 A
AFFX-BioB-M_at RHMu11ImmB 3 3 20 20 19 0.15 -0.10 0 0 1.0 -165 A
AFFX-BioB-3_at RHMu11ImmB 4 4 20 20 19 0.20 -0.49 0 0 1.0 -122 A
AFFX-BioC-5_at RHMu11ImmB 11 1 20 20 20 0.55 1.71 0 0 11.0 525 P
AFFX-BioC-3_at RHMu11ImmB 5 1 20 20 19 0.25 0.56 0 0 5.0 208 A
AFFX-BioDn-5_at RHMu11ImmB 8 5 20 20 20 0.40 0.85 0 0 1.6 166 A
AFFX-BioDn-3_at RHMu11ImmB 14 0 20 20 19 0.70 2.68 0 0 Undef 2910 P
AFFX-CreX-5_at RHMu11ImmB 19 0 20 20 19 0.95 5.33 0 0 Undef 4447 P
AFFX-CreX-3_at RHMu11ImmB 19 0 20 20 20 0.95 6.19 2 0 Undef 10233 P
AFFX-BioB-5_st RHMu11ImmB 6 4 20 20 20 0.30 0.60 0 0 1.5 81 A
AFFX-BioB-M_st RHMu11ImmB 3 5 20 20 17 0.15 -0.14 0 0 0.6 3 A

Total number of rows: 6595

Table truncated, full table size 410 Kbytes.




Supplementary data files not provided

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