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Sample GSM642

Query DataSets for GSM642

Status

Public on Dec 17, 2001

Title

Large Pre-BII cells 1b

Sample type

RNA

Source name

Large Pre-BII cells

Organism

Extracted molecule

total RNA

Description

B220+CD25+sIg- Large Pre BII cells sorted out of mouse bone marrow, sort no. 1

Submission date

Nov 27, 2001

Last update date

Mar 20, 2006

Contact name

Reinhard Hoffmann

E-mail(s)

reinhard.hoffmann@lrz.tum.de

Phone

+49-89-4140-4155

Organization name

Institute for medical microbiology

Street address

Trogerstr. 30

City

Munich

ZIP/Postal code

81675

Country

Germany

Platform ID

Series (2)

GSE13	Murine bone marrow B cell precursors
GSE272	T and B lymphocyte development profiles

Data table header descriptions
ID_REF	Affymetrix probe set identifier
Experiment Name	Experiment name
POSITIVE	Number of positive probe pairs
NEGATIVE	Number of negative probe pairs
PAIRS	Number of probe set specific probe pairs on the array
PAIRS_USED	Pairs used
PAIRS_IN_AVG	Trimmed probe pair set
POS_FRACTION	Positive/pairs used
Log Avg	Log average
PM Excess	Number of probe pairs where PM/MM exceeds the ratio limit (10 by default)
MM Excess	Number of probe pairs where MM/PM exceeds 1/ratio limit (10 by default)
POS/NEG	Positive/negative
VALUE	Average difference intensity
ABS_CALL	Whether a probe set is present, marginal, or absent; see Affymetrix Literature

Data table
ID_REF	Experiment Name	POSITIVE	NEGATIVE	PAIRS	PAIRS_USED	PAIRS_IN_AVG	POS_FRACTION	Log Avg	PM Excess	MM Excess	POS/NEG	VALUE	ABS_CALL
IL2_at	RHMu1LarB	2	3	19	19	18	0.11	-0.13	0	0	0.7	-63	A
IL10_at	RHMu1LarB	6	4	20	20	18	0.30	0.82	0	0	1.5	22	A
GMCSF_at	RHMu1LarB	4	6	20	20	19	0.20	-0.01	0	1	0.7	-62	A
TNFRII_at	RHMu1LarB	6	2	20	20	18	0.30	0.64	0	0	3.0	52	A
MIP1-B_at	RHMu1LarB	6	4	20	20	18	0.30	-0.17	0	0	1.5	27	A
IL4_at	RHMu1LarB	5	3	20	20	19	0.25	0.38	0	0	1.7	31	A
IL12_P40_at	RHMu1LarB	6	5	20	20	18	0.30	0.15	0	0	1.2	-25	A
TNFa_at	RHMu1LarB	2	4	20	20	18	0.10	0.27	0	0	0.5	6	A
TCRa_at	RHMu1LarB	1	7	20	20	20	0.05	-0.72	1	0	0.1	-134	A
AFFX-BioB-5_at	RHMu1LarB	4	5	20	20	19	0.20	0.07	0	0	0.8	20	A
AFFX-BioB-M_at	RHMu1LarB	3	1	20	20	18	0.15	0.62	0	0	3.0	70	A
AFFX-BioB-3_at	RHMu1LarB	5	3	20	20	18	0.25	0.45	0	0	1.7	72	A
AFFX-BioC-5_at	RHMu1LarB	12	1	20	20	20	0.60	1.76	0	0	12.0	407	P
AFFX-BioC-3_at	RHMu1LarB	15	0	20	20	20	0.75	2.34	0	0	Undef	485	P
AFFX-BioDn-5_at	RHMu1LarB	14	1	20	20	20	0.70	2.68	0	0	14.0	654	P
AFFX-BioDn-3_at	RHMu1LarB	17	1	20	20	19	0.85	3.88	0	0	17.0	3340	P
AFFX-CreX-5_at	RHMu1LarB	20	0	20	20	20	1.00	6.89	2	0	Undef	5041	P
AFFX-CreX-3_at	RHMu1LarB	19	0	20	20	20	0.95	7.15	5	0	Undef	9327	P
AFFX-BioB-5_st	RHMu1LarB	4	5	20	20	19	0.20	0.68	0	0	0.8	157	A
AFFX-BioB-M_st	RHMu1LarB	6	5	20	20	19	0.30	0.42	0	0	1.2	-49	A

Total number of rows: 6595

Table truncated, full table size 401 Kbytes.

Supplementary data files not provided

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