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Sample GSM6505998 Query DataSets for GSM6505998
Status Public on Jun 07, 2023
Title The bulb region of zigzag hair follicle at Day 12.0 [PR1507_09A2121_H1]
Sample type SRA
 
Source name hair follicle
Organism Mus musculus
Characteristics tissue: hair follicle
strain: C57BL/6N
treatment: Induction of hair regeneration by depilation
time point: Day 12.0
Extracted molecule total RNA
Extraction protocol RNA was harvested using RNeasy mini plus kit (Qiagen). 1.0 ng of total RNA was used for the construction of sequencing libraries.
RNA libraries for RNA-seq were prepared using SMART-Seq Stranded Kit and SMARter RNA Unique Dual Index Kit following manufacturer's protocols.
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NovaSeq 6000
 
Description PR1507_09_a
Data processing Genedata Profiler Genome ver. 13.0.11.
Sequence reads were trimmed for adaptor sequence.
Trimmed sequence reads were mapped to GrCM38/mm10 using STAR ver. 2.6.0c.
Read count extraction and normalization were performed using STAR.
Assembly: mm10
Supplementary files format and content: Processed_Data.txt: Tab-delimited text file includes TPM and read values for each Sample.
 
Submission date Aug 24, 2022
Last update date Jun 07, 2023
Contact name Makoto Takeo
E-mail(s) makoto.takeo@riken.jp
Phone +81783063460
Organization name RIKEN
Department BDR
Lab Laboratory for Organ Regeneration
Street address 2-2-3 Minatojima-minamimachi, Chuo-ku
City Kobe
State/province Hyogo
ZIP/Postal code 650-0047
Country Japan
 
Platform ID GPL24247
Series (1)
GSE211948 Gene expression comparison of the bulb region between different time points during bend formation of mouse zigzag hair follicle
Relations
BioSample SAMN30477949
SRA SRX17207517

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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