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Sample GSM6513607 Query DataSets for GSM6513607
Status Public on Jun 30, 2023
Title HCC019post1
Sample type RNA
 
Source name serum
Organism Homo sapiens
Characteristics disease/diagnosis: hepatocellular carcinoma
sample collection time: after operation within 14 days
molecule subtype: miRNA
Treatment protocol Blood was collected before surgical treatment.
Growth protocol Serum was collected from the blood.
Extracted molecule total RNA
Extraction protocol Total RNA from serum was extracted commercially available kit (miReasy mini kit (Qiagen)).
Label Cy5
Label protocol Extracted total RNA was labeled with Cy5 using the 3D-Gene miRNA labeling kit (Toray Industries Inc., Tokyo, Japan).
 
Hybridization protocol Hybridized for 16 h at 32 C with rotary shake (250 rpm). Hybridization buffer and washing protocol was followed by the protocol supplied by TORAY Industries, Inc..
Scan protocol 3D-Gene Scanner ((Toray Industries Inc., Tokyo, Japan) was used for scanning. Images were quantified using Extraction(Toray Industries Inc., Tokyo, Japan).
Description SH4XL56_Cell2
Data processing The raw data of each spot was normalized by substitution with a mean intensity of the background signal determined by all blank spots’ signal intensities of 95%
 
Submission date Aug 29, 2022
Last update date Jun 30, 2023
Contact name Satoko Takizawa
E-mail(s) satoko.takizawa.f3@mail.toray
Phone +81-467-32-9351
Organization name Toray Industries, Inc.
Street address 6-10-1, Tebiro
City Kanagawa
State/province Kamakura
ZIP/Postal code 2480036
Country Japan
 
Platform ID GPL18941
Series (1)
GSE212211 Development of blood biomarkers that distinguish pancreatic cancer from biliary tract cancer

Data table header descriptions
ID_REF
VALUE normalized

Data table
ID_REF VALUE
MIMAT0010195 5.7296761438
MIMAT0004481
MIMAT0000062
MIMAT0004482 6.5526386014
MIMAT0000063 3.6439761785
MIMAT0026472 4.5510002876
MIMAT0000064
MIMAT0004484 5.7518677131
MIMAT0000065 2.8553809402
MIMAT0004485
MIMAT0000066
MIMAT0004486 5.0090680695
MIMAT0004487
MIMAT0000067
MIMAT0004584
MIMAT0000414
MIMAT0004585
MIMAT0000415 2.5467220462
MIMAT0000416
MIMAT0004512

Total number of rows: 2555

Table truncated, full table size 55 Kbytes.




Supplementary file Size Download File type/resource
GSM6513607_SH4XL56_Cell2_20150109_1219_1Color_IntegratedResult.txt.gz 64.4 Kb (ftp)(http) TXT
Processed data included within Sample table

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