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Sample GSM6513840 Query DataSets for GSM6513840
Status Public on Jun 30, 2023
Title HCC460pre
Sample type RNA
 
Source name serum
Organism Homo sapiens
Characteristics disease/diagnosis: hepatocellular carcinoma
sample collection time: before operation
molecule subtype: miRNA
Treatment protocol Blood was collected before surgical treatment.
Growth protocol Serum was collected from the blood.
Extracted molecule total RNA
Extraction protocol Total RNA from serum was extracted commercially available kit (miReasy mini kit (Qiagen)).
Label Cy5
Label protocol Extracted total RNA was labeled with Cy5 using the 3D-Gene miRNA labeling kit (Toray Industries Inc., Tokyo, Japan).
 
Hybridization protocol Hybridized for 16 h at 32 C with rotary shake (250 rpm). Hybridization buffer and washing protocol was followed by the protocol supplied by TORAY Industries, Inc..
Scan protocol 3D-Gene Scanner ((Toray Industries Inc., Tokyo, Japan) was used for scanning. Images were quantified using Extraction(Toray Industries Inc., Tokyo, Japan).
Description SH8ZC47_Cell2
Data processing The raw data of each spot was normalized by substitution with a mean intensity of the background signal determined by all blank spots’ signal intensities of 95%
 
Submission date Aug 29, 2022
Last update date Jun 30, 2023
Contact name Satoko Takizawa
E-mail(s) satoko.takizawa.f3@mail.toray
Phone +81-467-32-9351
Organization name Toray Industries, Inc.
Street address 6-10-1, Tebiro
City Kanagawa
State/province Kamakura
ZIP/Postal code 2480036
Country Japan
 
Platform ID GPL21263
Series (1)
GSE212211 Development of blood biomarkers that distinguish pancreatic cancer from biliary tract cancer

Data table header descriptions
ID_REF
VALUE nothing in particular

Data table
ID_REF VALUE
MIMAT0010195 4.029898112
MIMAT0004481
MIMAT0000062 6.571463792
MIMAT0004482 4.833868302
MIMAT0000063 6.394655327
MIMAT0026472 2.371701685
MIMAT0000064 6.26528527
MIMAT0004484 5.291483193
MIMAT0000065 6.111296019
MIMAT0004485
MIMAT0000066 4.385719294
MIMAT0004486 4.305456758
MIMAT0004487
MIMAT0000067 4.577799581
MIMAT0004584
MIMAT0000414 2.433143562
MIMAT0004585
MIMAT0000415 4.681320414
MIMAT0004512
MIMAT0000098 3.836111606

Total number of rows: 2565

Table truncated, full table size 54 Kbytes.




Supplementary file Size Download File type/resource
GSM6513840_SH8ZC47_Cell2_20190308_1832_1Color_IntegratedResult.txt.gz 63.4 Kb (ftp)(http) TXT
Processed data included within Sample table

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