NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM6513842 Query DataSets for GSM6513842
Status Public on Jun 30, 2023
Title HCC472pre
Sample type RNA
 
Source name serum
Organism Homo sapiens
Characteristics disease/diagnosis: hepatocellular carcinoma
sample collection time: before operation
molecule subtype: miRNA
Treatment protocol Blood was collected before surgical treatment.
Growth protocol Serum was collected from the blood.
Extracted molecule total RNA
Extraction protocol Total RNA from serum was extracted commercially available kit (miReasy mini kit (Qiagen)).
Label Cy5
Label protocol Extracted total RNA was labeled with Cy5 using the 3D-Gene miRNA labeling kit (Toray Industries Inc., Tokyo, Japan).
 
Hybridization protocol Hybridized for 16 h at 32 C with rotary shake (250 rpm). Hybridization buffer and washing protocol was followed by the protocol supplied by TORAY Industries, Inc..
Scan protocol 3D-Gene Scanner ((Toray Industries Inc., Tokyo, Japan) was used for scanning. Images were quantified using Extraction(Toray Industries Inc., Tokyo, Japan).
Description SH8X435_Cell1
Data processing The raw data of each spot was normalized by substitution with a mean intensity of the background signal determined by all blank spots’ signal intensities of 95%
 
Submission date Aug 29, 2022
Last update date Jun 30, 2023
Contact name Satoko Takizawa
E-mail(s) satoko.takizawa.f3@mail.toray
Phone +81-467-32-9351
Organization name Toray Industries, Inc.
Street address 6-10-1, Tebiro
City Kanagawa
State/province Kamakura
ZIP/Postal code 2480036
Country Japan
 
Platform ID GPL21263
Series (1)
GSE212211 Development of blood biomarkers that distinguish pancreatic cancer from biliary tract cancer

Data table header descriptions
ID_REF
VALUE nothing in particular

Data table
ID_REF VALUE
MIMAT0010195 3.565651337
MIMAT0004481 2.124172441
MIMAT0000062 7.512815584
MIMAT0004482 4.491792213
MIMAT0000063 7.644016453
MIMAT0026472
MIMAT0000064 7.256829218
MIMAT0004484 4.833859003
MIMAT0000065 7.033677472
MIMAT0004485 2.948433489
MIMAT0000066 4.43625597
MIMAT0004486 3.867373195
MIMAT0004487 1.795259713
MIMAT0000067 4.798807835
MIMAT0004584
MIMAT0000414 3.038793387
MIMAT0004585
MIMAT0000415 4.482109229
MIMAT0004512
MIMAT0000098 4.862391753

Total number of rows: 2565

Table truncated, full table size 53 Kbytes.




Supplementary file Size Download File type/resource
GSM6513842_SH8X435_Cell1_20190222_1507_1Color_IntegratedResult.txt.gz 63.5 Kb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap