NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM6513866 Query DataSets for GSM6513866
Status Public on Jun 30, 2023
Title HCC591pre
Sample type RNA
 
Source name serum
Organism Homo sapiens
Characteristics disease/diagnosis: hepatocellular carcinoma
sample collection time: before operation
molecule subtype: miRNA
Treatment protocol Blood was collected before surgical treatment.
Growth protocol Serum was collected from the blood.
Extracted molecule total RNA
Extraction protocol Total RNA from serum was extracted commercially available kit (miReasy mini kit (Qiagen)).
Label Cy5
Label protocol Extracted total RNA was labeled with Cy5 using the 3D-Gene miRNA labeling kit (Toray Industries Inc., Tokyo, Japan).
 
Hybridization protocol Hybridized for 16 h at 32 C with rotary shake (250 rpm). Hybridization buffer and washing protocol was followed by the protocol supplied by TORAY Industries, Inc..
Scan protocol 3D-Gene Scanner ((Toray Industries Inc., Tokyo, Japan) was used for scanning. Images were quantified using Extraction(Toray Industries Inc., Tokyo, Japan).
Description SH8ZD05_Cell4
Data processing The raw data of each spot was normalized by substitution with a mean intensity of the background signal determined by all blank spots’ signal intensities of 95%
 
Submission date Aug 29, 2022
Last update date Jun 30, 2023
Contact name Satoko Takizawa
E-mail(s) satoko.takizawa.f3@mail.toray
Phone +81-467-32-9351
Organization name Toray Industries, Inc.
Street address 6-10-1, Tebiro
City Kanagawa
State/province Kamakura
ZIP/Postal code 2480036
Country Japan
 
Platform ID GPL21263
Series (1)
GSE212211 Development of blood biomarkers that distinguish pancreatic cancer from biliary tract cancer

Data table header descriptions
ID_REF
VALUE nothing in particular

Data table
ID_REF VALUE
MIMAT0010195 3.647277684
MIMAT0004481
MIMAT0000062 6.664212682
MIMAT0004482 4.765200245
MIMAT0000063 7.11325162
MIMAT0026472
MIMAT0000064 6.509915589
MIMAT0004484 5.677508642
MIMAT0000065 6.410286642
MIMAT0004485
MIMAT0000066 2.780810685
MIMAT0004486 4.178575477
MIMAT0004487
MIMAT0000067 3.558586653
MIMAT0004584
MIMAT0000414 6.156426433
MIMAT0004585
MIMAT0000415 5.664493625
MIMAT0004512
MIMAT0000098 3.248312156

Total number of rows: 2565

Table truncated, full table size 52 Kbytes.




Supplementary file Size Download File type/resource
GSM6513866_SH8ZD05_Cell4_20190309_1724_1Color_IntegratedResult.txt.gz 63.6 Kb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap