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Sample GSM653 Query DataSets for GSM653
Status Public on Dec 17, 2001
Title Pre-BI cells 1b
Sample type RNA
 
Source name Pre-BI cells
Organism Mus musculus
Extracted molecule total RNA
 
Description B220+c-kit+ Pre BI cells sorted out of mouse bone marrow, sort no. 1
 
Submission date Nov 27, 2001
Last update date Mar 10, 2006
Contact name Reinhard Hoffmann
E-mail(s) reinhard.hoffmann@lrz.tum.de
Phone +49-89-4140-4155
Organization name Institute for medical microbiology
Street address Trogerstr. 30
City Munich
ZIP/Postal code 81675
Country Germany
 
Platform ID GPL76
Series (2)
GSE13 Murine bone marrow B cell precursors
GSE272 T and B lymphocyte development profiles

Data table header descriptions
ID_REF Affymetrix probe set identifier
Experiment Name Experiment name
POSITIVE Number of positive probe pairs
NEGATIVE Number of negative probe pairs
PAIRS Number of probe set specific probe pairs on the array
PAIRS_USED Pairs used
PAIRS_IN_AVG Trimmed probe pair set
POS_FRACTION Positive/pairs used
Log Avg Log average
PM Excess Number of probe pairs where PM/MM exceeds the ratio limit (10 by default)
MM Excess Number of probe pairs where MM/PM exceeds 1/ratio limit (10 by default)
POS/NEG Positive/negative
VALUE Average difference intensity
ABS_CALL Whether a probe set is present, marginal, or absent; see Affymetrix Literature

Data table
ID_REF Experiment Name POSITIVE NEGATIVE PAIRS PAIRS_USED PAIRS_IN_AVG POS_FRACTION Log Avg PM Excess MM Excess POS/NEG VALUE ABS_CALL
IL2_at RHMu1PreB 5 3 19 19 17 0.26 0.51 0 0 1.7 83 A
IL10_at RHMu1PreB 5 5 20 20 18 0.25 -0.04 0 0 1.0 -25 A
GMCSF_at RHMu1PreB 5 3 20 20 17 0.25 0.26 0 0 1.7 113 A
TNFRII_at RHMu1PreB 4 2 20 20 18 0.20 0.84 0 0 2.0 91 A
MIP1-B_at RHMu1PreB 6 4 20 20 17 0.30 0.44 0 0 1.5 175 A
IL4_at RHMu1PreB 0 4 20 20 18 0.00 0.08 0 0 0.0 -2 A
IL12_P40_at RHMu1PreB 3 5 20 20 19 0.15 -0.04 0 0 0.6 -145 A
TNFa_at RHMu1PreB 1 4 20 20 18 0.05 -0.51 0 0 0.3 -96 A
TCRa_at RHMu1PreB 2 7 20 20 19 0.10 -0.89 0 0 0.3 -298 A
AFFX-BioB-5_at RHMu1PreB 2 4 20 20 18 0.10 -0.27 0 0 0.5 -100 A
AFFX-BioB-M_at RHMu1PreB 2 3 20 20 18 0.10 0.01 0 0 0.7 -21 A
AFFX-BioB-3_at RHMu1PreB 4 3 20 20 18 0.20 0.59 0 0 1.3 251 A
AFFX-BioC-5_at RHMu1PreB 9 1 20 20 20 0.45 1.72 0 0 9.0 831 P
AFFX-BioC-3_at RHMu1PreB 7 1 20 20 19 0.35 1.16 0 0 7.0 517 P
AFFX-BioDn-5_at RHMu1PreB 13 1 20 20 20 0.65 2.90 0 0 13.0 1138 P
AFFX-BioDn-3_at RHMu1PreB 16 0 20 20 18 0.80 3.46 0 0 Undef 3618 P
AFFX-CreX-5_at RHMu1PreB 20 0 20 20 20 1.00 7.13 4 0 Undef 9873 P
AFFX-CreX-3_at RHMu1PreB 18 0 20 20 20 0.90 7.13 5 0 Undef 14239 P
AFFX-BioB-5_st RHMu1PreB 5 5 20 20 18 0.25 1.12 0 0 1.0 575 A
AFFX-BioB-M_st RHMu1PreB 3 3 20 20 17 0.15 0.24 0 0 1.0 -1 A

Total number of rows: 6595

Table truncated, full table size 403 Kbytes.




Supplementary data files not provided

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