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Sample GSM6589249 Query DataSets for GSM6589249
Status Public on Aug 02, 2023
Title replicate_4_P2059
Sample type SRA
 
Source name colonic mucosa
Organism Mus musculus
Characteristics tissue: colonic mucosa
strain: C57BL/6J
genotype: ApcMin/+; p16cis/cis
Sex: Female
age: 15 wk
Extracted molecule total RNA
Extraction protocol RNA was extracted using AllPrep DNA/RNA Mini Kit (QIAGEN). 1 ug of total RNA was used for the construction of sequencing libraries.
RNA-seq libraries were prepared using standard BGI protocols (mRNA enrichment by rRNA depletion and oligo dT selection)
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model BGISEQ-500
 
Description replicate_4_P2059
Data processing none provided by the submitter
 
Submission date Sep 16, 2022
Last update date Aug 02, 2023
Contact name Lanlan Shen
E-mail(s) lanlanshenlab@gmail.com
Organization name Baylor College of Medicine
Department Pediatrics
Lab Shen
Street address 1100 Bates Ave
City Houston
State/province Texas
ZIP/Postal code 77030
Country USA
 
Platform ID GPL23479
Series (2)
GSE213566 p16 epimutation modulates the tumor microenvironment and promotes malignancy of Apc-mutant colon cancer (RNA-Seq)
GSE213568 p16 epimutation modulates the tumor microenvironment and promotes malignancy of Apc-mutant colon cancer
Relations
BioSample SAMN30901784
SRA SRX17610055

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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