|
Status |
Public on Aug 02, 2023 |
Title |
replicate_4_P2059 |
Sample type |
SRA |
|
|
Source name |
colonic mucosa
|
Organism |
Mus musculus |
Characteristics |
tissue: colonic mucosa strain: C57BL/6J genotype: ApcMin/+; p16cis/cis Sex: Female age: 15 wk
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA was extracted using AllPrep DNA/RNA Mini Kit (QIAGEN). 1 ug of total RNA was used for the construction of sequencing libraries. RNA-seq libraries were prepared using standard BGI protocols (mRNA enrichment by rRNA depletion and oligo dT selection)
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
BGISEQ-500 |
|
|
Description |
replicate_4_P2059
|
Data processing |
none provided by the submitter
|
|
|
Submission date |
Sep 16, 2022 |
Last update date |
Aug 02, 2023 |
Contact name |
Lanlan Shen |
E-mail(s) |
lanlanshenlab@gmail.com
|
Organization name |
Baylor College of Medicine
|
Department |
Pediatrics
|
Lab |
Shen
|
Street address |
1100 Bates Ave
|
City |
Houston |
State/province |
Texas |
ZIP/Postal code |
77030 |
Country |
USA |
|
|
Platform ID |
GPL23479 |
Series (2) |
GSE213566 |
p16 epimutation modulates the tumor microenvironment and promotes malignancy of Apc-mutant colon cancer (RNA-Seq) |
GSE213568 |
p16 epimutation modulates the tumor microenvironment and promotes malignancy of Apc-mutant colon cancer |
|
Relations |
BioSample |
SAMN30901784 |
SRA |
SRX17610055 |