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Sample GSM67083 Query DataSets for GSM67083
Status Public on Aug 06, 2005
Title Arabidopsis_Seedling02
Sample type RNA
 
Source name seedling
Organism Arabidopsis thaliana
Characteristics Landsberg erecta (Ler)
Growth protocol Seedling tissue was collected by growing Ler seedlings on Murashige and Skoog media plates for 10 days, and whole seedlings were harvested for RNA.
Extracted molecule total RNA
Label Bioarray High Yield RNA Transcript Labeling Kit
 
Hybridization protocol Affymetrix GeneChip technology
Description Seedling tissue was collected by growing Ler seedlings on Murashige and Skoog media plates for 10 days, and whole seedlings were harvested for RNA.
Data processing statistical averaging of probes using Affymetrix software
 
Submission date Aug 04, 2005
Last update date Aug 28, 2018
Contact name Daphne Preuss
E-mail(s) dpreuss@midway.uchicago.edu, rob.swanson@valpo.edu, tclark@ittc.ku.edu
Organization name The University of Chicago
Department Molecular Genetics and Cell Biology
Street address 1103 E. 57th Street
City Chicago
State/province IL
ZIP/Postal code 66037
Country USA
 
Platform ID GPL198
Series (1)
GSE3056 Arabidopsis Pollination Study
Relations
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE expression value determined from probe set
ABS_CALL absent (A) or present (P)
DETECTION P-VALUE for present call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 309.6 P 0.004484
AFFX-BioB-M_at 321.9 P 0.000044
AFFX-BioB-3_at 237.2 P 0.000509
AFFX-BioC-5_at 801.3 P 0.000095
AFFX-BioC-3_at 343.6 P 0.000169
AFFX-BioDn-5_at 566.3 P 0.000044
AFFX-BioDn-3_at 3381.4 P 0.000052
AFFX-CreX-5_at 5290.7 P 0.000044
AFFX-CreX-3_at 8017.3 P 0.000044
AFFX-DapX-5_at 35.5 M 0.054213
AFFX-DapX-M_at 49.8 A 0.067678
AFFX-DapX-3_at 6.2 A 0.910541
AFFX-LysX-5_at 14.1 A 0.603080
AFFX-LysX-M_at 30.1 A 0.749204
AFFX-LysX-3_at 7.2 A 0.354453
AFFX-PheX-5_at 5.4 A 0.891021
AFFX-PheX-M_at 5.8 A 0.843268
AFFX-PheX-3_at 22.8 A 0.724854
AFFX-ThrX-5_at 12.9 A 0.588620
AFFX-ThrX-M_at 22.9 A 0.617401

Total number of rows: 22810

Table truncated, full table size 599 Kbytes.




Supplementary file Size Download File type/resource
GSM67083.cel.gz 3.3 Mb (ftp)(http) CEL
GSM67083.chp.gz 5.9 Mb (ftp)(http) CHP
GSM67083.dat.gz 27.6 Mb (ftp)(http) DAT
GSM67083.exp.gz 533 b (ftp)(http) EXP
GSM67083.rpt.gz 804 b (ftp)(http) RPT
Processed data provided as supplementary file

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