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Sample GSM67086 Query DataSets for GSM67086
Status Public on Aug 06, 2005
Title Arabidopsis_Stigma02
Sample type RNA
 
Source name pistil
Organism Arabidopsis thaliana
Characteristics Landsberg erecta (Ler)
Growth protocol Ovary tissues were isolated from pistils after emasculating stage 8 buds (Bowman, 1994) of Landsberg erecta (Ler) flowers. After one day of growth, pistils were harvested. Stigma was seperated from ovaries using superfine tip scissors and flash frozen in liquid nitrogen until RNA harvesting.
Extracted molecule total RNA
Label Bioarray High Yield RNA Transcript Labeling Kit
 
Hybridization protocol Affymetrix GeneChip technology
Description Ovary tissues were isolated from pistils after emasculating stage 8 buds (Bowman, 1994) of Landsberg erecta (Ler) flowers. After one day of growth, pistils were harvested. Stigma was seperated from ovaries using superfine tip scissors and flash frozen in liquid nitrogen until RNA harvesting.
Data processing statistical averaging of probes using Affymetrix software
 
Submission date Aug 04, 2005
Last update date Aug 28, 2018
Contact name Daphne Preuss
E-mail(s) dpreuss@midway.uchicago.edu, rob.swanson@valpo.edu, tclark@ittc.ku.edu
Organization name The University of Chicago
Department Molecular Genetics and Cell Biology
Street address 1103 E. 57th Street
City Chicago
State/province IL
ZIP/Postal code 66037
Country USA
 
Platform ID GPL198
Series (1)
GSE3056 Arabidopsis Pollination Study
Relations
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE expression value determined from probe set
ABS_CALL present (P) or absent (A)
DETECTION P-VALUE for present call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 271.7 P 0.014887
AFFX-BioB-M_at 268.8 P 0.000091
AFFX-BioB-3_at 194.6 P 0.002867
AFFX-BioC-5_at 617.4 P 0.000195
AFFX-BioC-3_at 246.2 P 0.000390
AFFX-BioDn-5_at 516.0 P 0.000044
AFFX-BioDn-3_at 2918.0 P 0.000052
AFFX-CreX-5_at 6411.2 P 0.000044
AFFX-CreX-3_at 8287.3 P 0.000044
AFFX-DapX-5_at 41.0 P 0.046482
AFFX-DapX-M_at 47.6 A 0.147712
AFFX-DapX-3_at 4.0 A 0.963431
AFFX-LysX-5_at 11.1 A 0.420267
AFFX-LysX-M_at 82.4 A 0.368438
AFFX-LysX-3_at 16.2 A 0.396920
AFFX-PheX-5_at 4.5 A 0.910522
AFFX-PheX-M_at 8.6 A 0.783476
AFFX-PheX-3_at 6.5 A 0.921998
AFFX-ThrX-5_at 12.9 A 0.594652
AFFX-ThrX-M_at 38.5 A 0.579733

Total number of rows: 22810

Table truncated, full table size 598 Kbytes.




Supplementary file Size Download File type/resource
GSM67086.cel.gz 3.4 Mb (ftp)(http) CEL
GSM67086.chp.gz 6.1 Mb (ftp)(http) CHP
GSM67086.dat.gz 29.3 Mb (ftp)(http) DAT
GSM67086.exp.gz 505 b (ftp)(http) EXP
GSM67086.rpt.gz 808 b (ftp)(http) RPT
Processed data provided as supplementary file

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