NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM67087 Query DataSets for GSM67087
Status Public on Aug 06, 2005
Title Arabidopsis_Stigma03
Sample type RNA
 
Source name pistil
Organism Arabidopsis thaliana
Characteristics Landsberg erecta (Ler)
Growth protocol Ovary tissues were isolated from pistils after emasculating stage 8 buds (Bowman, 1994) of Landsberg erecta (Ler) flowers. After one day of growth, pistils were harvested. Stigma was seperated from ovaries using superfine tip scissors and flash frozen in liquid nitrogen until RNA harvesting.
Extracted molecule total RNA
Label Bioarray High Yield RNA Transcript Labeling Kit
 
Hybridization protocol Affymetrix GeneChip technology
Description Ovary tissues were isolated from pistils after emasculating stage 8 buds (Bowman, 1994) of Landsberg erecta (Ler) flowers. After one day of growth, pistils were harvested. Stigma was seperated from ovaries using superfine tip scissors and flash frozen in liquid nitrogen until RNA harvesting.
Data processing statistical averaging of probes using Affymetrix software
 
Submission date Aug 04, 2005
Last update date Aug 28, 2018
Contact name Daphne Preuss
E-mail(s) dpreuss@midway.uchicago.edu, rob.swanson@valpo.edu, tclark@ittc.ku.edu
Organization name The University of Chicago
Department Molecular Genetics and Cell Biology
Street address 1103 E. 57th Street
City Chicago
State/province IL
ZIP/Postal code 66037
Country USA
 
Platform ID GPL198
Series (1)
GSE3056 Arabidopsis Pollination Study
Relations
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE expression value determined from probe set
ABS_CALL present (P) or absent (A)
DETECTION P-VALUE for present call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 331.9 P 0.023929
AFFX-BioB-M_at 285.0 P 0.000509
AFFX-BioB-3_at 199.2 P 0.007620
AFFX-BioC-5_at 702.1 P 0.000258
AFFX-BioC-3_at 375.9 P 0.001593
AFFX-BioDn-5_at 451.6 P 0.000044
AFFX-BioDn-3_at 2809.6 P 0.000081
AFFX-CreX-5_at 5683.5 P 0.000044
AFFX-CreX-3_at 8243.1 P 0.000044
AFFX-DapX-5_at 24.1 A 0.175328
AFFX-DapX-M_at 98.5 A 0.067678
AFFX-DapX-3_at 21.0 A 0.834139
AFFX-LysX-5_at 12.6 A 0.485110
AFFX-LysX-M_at 74.6 A 0.440646
AFFX-LysX-3_at 24.2 A 0.470241
AFFX-PheX-5_at 4.5 A 0.941556
AFFX-PheX-M_at 15.8 A 0.804734
AFFX-PheX-3_at 11.2 A 0.891021
AFFX-ThrX-5_at 12.5 A 0.846949
AFFX-ThrX-M_at 40.0 A 0.500000

Total number of rows: 22810

Table truncated, full table size 599 Kbytes.




Supplementary file Size Download File type/resource
GSM67087.cel.gz 3.4 Mb (ftp)(http) CEL
GSM67087.chp.gz 6.1 Mb (ftp)(http) CHP
GSM67087.dat.gz 29.2 Mb (ftp)(http) DAT
GSM67087.exp.gz 504 b (ftp)(http) EXP
GSM67087.rpt.gz 804 b (ftp)(http) RPT
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap