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Sample GSM67112 Query DataSets for GSM67112
Status Public on Aug 06, 2005
Title Arabidopsis_Seedling04
Sample type RNA
 
Source name plant
Organism Arabidopsis thaliana
Characteristics Landsberg erecta (Ler)
Growth protocol Seedling tissue was collected by growing Ler seedlings on Murashige and Skoog media plates for 10 days, and whole seedlings were harvested for RNA.
Extracted molecule total RNA
Label Bioarray High Yield RNA Transcript Labeling Kit
 
Description Seedling tissue was collected by growing Ler seedlings on Murashige and Skoog media plates for 10 days, and whole seedlings were harvested for RNA.
Data processing statistical averaging of probes using Affymetrix software
 
Submission date Aug 04, 2005
Last update date Aug 28, 2018
Contact name Daphne Preuss
E-mail(s) dpreuss@midway.uchicago.edu, rob.swanson@valpo.edu, tclark@ittc.ku.edu
Organization name The University of Chicago
Department Molecular Genetics and Cell Biology
Street address 1103 E. 57th Street
City Chicago
State/province IL
ZIP/Postal code 66037
Country USA
 
Platform ID GPL198
Series (1)
GSE3056 Arabidopsis Pollination Study
Relations
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE expression value determined from probe set
ABS_CALL present (P) or absent (A)
DETECTION P-VALUE for present call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 293.5 P 0.004484
AFFX-BioB-M_at 315.8 P 0.000081
AFFX-BioB-3_at 218.6 P 0.000127
AFFX-BioC-5_at 604.2 P 0.000110
AFFX-BioC-3_at 301.9 P 0.000095
AFFX-BioDn-5_at 607.1 P 0.000044
AFFX-BioDn-3_at 3079.1 P 0.000052
AFFX-CreX-5_at 6055.3 P 0.000044
AFFX-CreX-3_at 7910.1 P 0.000044
AFFX-DapX-5_at 16.1 A 0.382599
AFFX-DapX-M_at 36.4 A 0.205732
AFFX-DapX-3_at 6.9 A 0.897835
AFFX-LysX-5_at 3.1 A 0.645547
AFFX-LysX-M_at 19.0 A 0.783476
AFFX-LysX-3_at 26.8 A 0.300606
AFFX-PheX-5_at 10.2 A 0.588620
AFFX-PheX-M_at 3.1 A 0.921998
AFFX-PheX-3_at 35.1 A 0.544587
AFFX-ThrX-5_at 21.7 A 0.470241
AFFX-ThrX-M_at 27.5 A 0.411380

Total number of rows: 22810

Table truncated, full table size 598 Kbytes.




Supplementary file Size Download File type/resource
GSM67112.cel.gz 3.4 Mb (ftp)(http) CEL
GSM67112.chp.gz 5.9 Mb (ftp)(http) CHP
GSM67112.dat.gz 27.6 Mb (ftp)(http) DAT
GSM67112.exp.gz 508 b (ftp)(http) EXP
GSM67112.rpt.gz 913 b (ftp)(http) RPT
Processed data provided as supplementary file

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