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Sample GSM6725571 Query DataSets for GSM6725571
Status Public on Sep 11, 2023
Title genomic DNA from SOL07_LC_FrozenTissue
Sample type genomic
Source name SOL07
Organism Homo sapiens
Characteristics gender: Male
sample type: clinical sample
disease state: lung adenocarcinoma
subtype: Solid subtype
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from cell lines or clinical samples using QIAquick DNA mini kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human MethylationEPIC Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description SAMPLE 13
Data processing BeadStudio software v3.2
Unmethylated and methylated signal intensities
Submission date Nov 10, 2022
Last update date Sep 11, 2023
Contact name Masaki Fukuyo
Organization name Chiba University
Department Department of Molecular Oncology
Street address 1-8-1 Inohana, Chuo-ku
City Chiba
ZIP/Postal code 260-8670
Country Japan
Platform ID GPL21145
Series (2)
GSE217731 Association of frequent hypermethylation with high grade histological subtype in lung adenocarcinoma. (Infinium MethylationEPIC)
GSE217733 Association of frequent hypermethylation with high grade histological subtype in lung adenocarcinoma

Data table header descriptions
VALUE Average Beta or normalized (provide the normalization method) Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000029 0.39348 0
cg00000103 0.58729 0
cg00000109 0.84705 0
cg00000155 0.90279 0
cg00000158 0.90967 0
cg00000165 0.21106 0
cg00000221 0.5816 0
cg00000236 0.80729 0
cg00000289 0.79416 0
cg00000292 0.63361 0
cg00000321 0.26696 0
cg00000363 0.29722 0
cg00000540 0.59413 0
cg00000579 0.6851 0
cg00000596 0.40663 0
cg00000622 0.02416 0
cg00000658 0.74089 0
cg00000714 0.1553 0
cg00000721 0.89049 0
cg00000734 0.07294 0

Total number of rows: 867181

Table truncated, full table size 17681 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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