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Sample GSM6725586 Query DataSets for GSM6725586
Status Public on Sep 11, 2023
Title genomic DNA from LEP03_LC_FrozenTissue
Sample type genomic
Source name LEP03
Organism Homo sapiens
Characteristics gender: FEMALE
sample type: clinical sample
disease state: lung adenocarcinoma
subtype: Lepidic subtype
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from cell lines or clinical samples using QIAquick DNA mini kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description SAMPLE 14
Data processing BeadStudio software v3.2
Submission date Nov 10, 2022
Last update date Sep 11, 2023
Contact name Masaki Fukuyo
Organization name Chiba University
Department Department of Molecular Oncology
Street address 1-8-1 Inohana, Chuo-ku
City Chiba
ZIP/Postal code 260-8670
Country Japan
Platform ID GPL13534
Series (2)
GSE217732 Association of frequent hypermethylation with high grade histological subtype in lung adenocarcinoma. (Infinium Methylation450K)
GSE217733 Association of frequent hypermethylation with high grade histological subtype in lung adenocarcinoma

Data table header descriptions
VALUE Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000029 0.33 0
cg00000108 0.93807 0
cg00000109 0.83947 0
cg00000165 0.25955 0
cg00000236 0.82298 0
cg00000289 0.69174 0
cg00000292 0.63629 0
cg00000321 0.35159 0
cg00000363 0.28509 0
cg00000622 0.01707 0
cg00000658 0.76017 0
cg00000714 0.18817 0
cg00000721 0.88377 0
cg00000734 0.08742 0
cg00000769 0.04872 0
cg00000807 0.75589 0
cg00000884 0.8529 0
cg00000905 0.08385 0
cg00000924 0.46261 0
cg00000948 0.86851 0

Total number of rows: 485577

Table truncated, full table size 9908 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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