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Sample GSM6783757

Query DataSets for GSM6783757

Status

Public on Dec 04, 2022

Title

DNase-seq from T-helper 17 cell (ENCLB650FKX)

Sample type

SRA

Source name

Homo sapiens female adult (25 years) T-helper 17 primary cell

Organism

Homo sapiens

Characteristics

cell_type: T-helper 17 cell
biomaterial_type: primary cell
biosample encode accession: ENCBS605VNU (SAMN18513696)
Sex: female
dev stage: adult
age: 25 year
donor_id: ENCDO011KGM
lab: John Stamatoyannopoulos, UW
source: AllCells
link: ENCBS605VNU at ENCODE; https://www.encodeproject.org/ENCBS605VNU/
link: Derived from ENCODE donor ENCDO011KGM; https://www.encodeproject.org/ENCDO011KGM/

Extracted molecule

genomic DNA

Extraction protocol

extraction protocol: https://www.encodeproject.org/documents/980de32c-f7ec-4cd7-b736-61faf723c186/@@download/attachment/newnuclei_isolation_from_human_tissue-combined.pdf

Library strategy

DNase-Hypersensitivity

Library source

genomic

Library selection

DNAse

Instrument model

Illumina HiSeq 4000

Description

https://www.encodeproject.org/experiments/ENCSR139KYP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR139KYP
assay title: DNase-seq
assembly: GRCh38
encode release date: 2022-06-07
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB650FKX

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Dec 03, 2022

Last update date

Jan 20, 2023

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL20301

Series (1)

GSE220029

DNase-seq from T-helper 17 cell (ENCSR139KYP)

Relations

BioSample

SAMN18513696

SRA

SRX18486493

Named Annotation

GSM6783757_ENCFF159ORY_read-depth_normalized_signal_GRCh38.bigWig

Supplementary file	Size	Download	File type/resource
GSM6783757_ENCFF062VXI_peaks_GRCh38.bigBed	739.8 Kb	(ftp)(http)	BIGBED
GSM6783757_ENCFF121CKD_FDR_cut_rate_GRCh38.bigBed	62.1 Mb	(ftp)(http)	BIGBED
GSM6783757_ENCFF159ORY_read-depth_normalized_signal_GRCh38.bigWig	569.2 Mb	(ftp)(http)	BIGWIG
GSM6783757_ENCFF267FBM_peaks_GRCh38.bigBed	444.8 Kb	(ftp)(http)	BIGBED
GSM6783757_ENCFF398BNI_FDR_cut_rate_GRCh38.bed.gz	61.2 Mb	(ftp)(http)	BED
GSM6783757_ENCFF486WJB_footprints_GRCh38.bed.gz	510.8 Kb	(ftp)(http)	BED
GSM6783757_ENCFF618MIE_peaks_GRCh38.bed.gz	353.3 Kb	(ftp)(http)	BED
GSM6783757_ENCFF663MTA_peaks_GRCh38.starch	303.3 Kb	(ftp)(http)	STARCH
GSM6783757_ENCFF815HBL_peaks_GRCh38.bed.gz	255.3 Kb	(ftp)(http)	BED
GSM6783757_ENCFF961JEE_footprints_GRCh38.bigBed	718.9 Kb	(ftp)(http)	BIGBED
GSM6783757_ENCLB650FKX_README.txt.gz	1.1 Kb	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file