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GEO accession:
Sample GSM6800710
Query DataSets for GSM6800710
Status
Public on Dec 08, 2022
Title
microRNA counts from testis (ENCLB011SBP)
Sample type
RNA
Source name
Homo sapiens testis tissue male adult (54 years)
Organism
Homo sapiens
Characteristics
tissue_type: testis
biomaterial_type: tissue
description: Testis 2-1
biosample encode accession: ENCBS288YWQ (SAMN05897057)
age: 54 year
dev stage: adult
donor_id: ENCDO451RUA
Sex: male
lab: Barbara Wold, Caltech
link: ENCBS288YWQ at ENCODE;
https://www.encodeproject.org/ENCBS288YWQ/
link: Derived from ENCODE donor ENCDO451RUA;
https://www.encodeproject.org/ENCDO451RUA/
Extracted molecule
total RNA
Extraction protocol
general protocol:
https://www.encodeproject.org/documents/97468ce9-3727-4f3c-bc96-48dc4d248cc9/@@download/attachment/nanostring_assay_overview.png
general protocol:
https://www.encodeproject.org/documents/d90ef931-e735-4b25-a7f8-6ddbcaea71dd/@@download/attachment/NanoString%20miRNA%20Assay.pdf
Label
N/A
Label protocol
Nanostring protocol
Hybridization protocol
Nanostring protocol
Scan protocol
Nanostring protocol
Description
https://www.encodeproject.org/experiments/ENCSR494FIS/
***************
biological replicate number: 1
technical replicate number: 1
description: Nanostring miRNA Array on human testis
experiment encode accession: ENCSR494FIS
assay title: microRNA counts
assembly: GRCh38
encode release date: 2016-07-29
lab: Ali Mortazavi, UCI
library encode accession: ENCLB011SBP
size range: <30
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Dec 07, 2022
Last update date
Dec 08, 2022
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL26945
Series (1)
GSE220373
microRNA counts from testis (ENCSR494FIS)
Supplementary file
Size
Download
File type/resource
GSM6800710_ENCFF100WQU_reporter_code_counts_mm10.rcc.gz
7.0 Kb
(ftp)
(http)
RCC
GSM6800710_ENCFF461WHX_microRNA_quantifications_GRCh38.bed.gz
12.9 Kb
(ftp)
(http)
BED
GSM6800710_ENCFF726ZEI_microRNA_quantifications_GRCh38.bigBed
62.5 Kb
(ftp)
(http)
BIGBED
GSM6800710_ENCLB011SBP_README.txt.gz
533 b
(ftp)
(http)
TXT
Processed data provided as supplementary file
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