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| Status |
Public on Sep 06, 2023 |
| Title |
Human meningioma, FFPE [RT46] |
| Sample type |
genomic |
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| Source name |
Human meningioma, FFPE
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| Organism |
Homo sapiens |
| Characteristics |
disease: meningioma
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Qiagen FFPE Allprep or DNA extraction kits were used. Deparrafinization was performed with xylene.
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| Label |
cy3, cy5
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| Label protocol |
Standard Illumina protocol
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| Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridised according to manufacturer's instructions
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| Scan protocol |
Arrays were imaged using Illumina iScan, using standard settingsusing standard settings
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| Description |
RT46
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| Data processing |
Refer to manuscript, Chen, Choudhury et al.
Average Beta or normalized (provide the normalization method) Average Beta
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| Submission date |
Dec 15, 2022 |
| Last update date |
Sep 06, 2023 |
| Contact name |
William Chen |
| Organization name |
UCSF
|
| Street address |
1450 3rd Street, HD 402
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| City |
San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94158 |
| Country |
USA |
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| Platform ID |
GPL21145 |
| Series (1) |
| GSE221029 |
DNA methylation of human FFPE meningioma samples |
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| Supplementary file |
Size |
Download |
File type/resource |
| GSM6840221_206254580078_R05C01_Grn.idat.gz |
6.9 Mb |
(ftp)(http) |
IDAT |
| GSM6840221_206254580078_R05C01_Red.idat.gz |
7.0 Mb |
(ftp)(http) |
IDAT |
| Processed data are available on Series record |
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