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Status |
Public on Sep 06, 2023 |
Title |
Human meningioma, FFPE [RT36] |
Sample type |
genomic |
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Source name |
Human meningioma, FFPE
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Organism |
Homo sapiens |
Characteristics |
disease: meningioma
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Extracted molecule |
genomic DNA |
Extraction protocol |
Qiagen FFPE Allprep or DNA extraction kits were used. Deparrafinization was performed with xylene.
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Label |
cy3, cy5
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Label protocol |
Standard Illumina protocol
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Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridised according to manufacturer's instructions
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Scan protocol |
Arrays were imaged using Illumina iScan, using standard settingsusing standard settings
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Description |
RT36
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Data processing |
Refer to manuscript, Chen, Choudhury et al. Average Beta or normalized (provide the normalization method) Average Beta
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Submission date |
Dec 15, 2022 |
Last update date |
Sep 06, 2023 |
Contact name |
William Chen |
Organization name |
UCSF
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Street address |
1450 3rd Street, HD 402
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City |
San Francisco |
State/province |
CA |
ZIP/Postal code |
94158 |
Country |
USA |
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Platform ID |
GPL21145 |
Series (1) |
GSE221029 |
DNA methylation of human FFPE meningioma samples |
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Supplementary file |
Size |
Download |
File type/resource |
GSM6840226_206254580088_R02C01_Grn.idat.gz |
6.8 Mb |
(ftp)(http) |
IDAT |
GSM6840226_206254580088_R02C01_Red.idat.gz |
6.9 Mb |
(ftp)(http) |
IDAT |
Processed data are available on Series record |
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