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Sample GSM685525 Query DataSets for GSM685525
Status Public on Sep 17, 2013
Title SCC_K3_expression
Sample type RNA
 
Source name Squamous cell carcinoma
Organism Homo sapiens
Characteristics tissue: Squamous cell carcinoma
type: SCC
Growth protocol Cell lines were cultured in 10% FCS + 90% GMEM + antibiotics, according to standard maintenance procedures
Extracted molecule total RNA
Extraction protocol TRIzol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Standard Affymetrix labelling protocol
 
Hybridization protocol Standard Affymetrix hybridisation protocol
Scan protocol Standard Affymetrix scanning protocol
Description K3
Data processing Data analysis was done using Bioconductor R packages. Background correction and normalisation were performed using Robust Microarray Analysis (RMA) provided by the Affy package
 
Submission date Mar 04, 2011
Last update date Sep 17, 2013
Contact name Ian Roberts
E-mail(s) ian.roberts@cantab.net
Phone 0044 1223 763 279
Organization name Hutchison MRC Research Centre
Department Cancer Cell Unit
Lab Coleman
Street address Hills Road
City Cambridge
ZIP/Postal code CB2 0XZ
Country United Kingdom
 
Platform ID GPL570
Series (2)
GSE27333 Gain of the oncostatin M receptor in cervical squamous cell carcinoma is associated with adverse clinical outcome
GSE27678 Gene expression analysis in a variety of normal, premalignant and squamous cell carcinomas of the cervix

Data table header descriptions
ID_REF
VALUE log 2 RMA normalized signal

Data table
ID_REF VALUE
1007_s_at 9.447134628
1053_at 7.583494123
117_at 7.205646737
121_at 6.799710767
1255_g_at 3.587412813
1294_at 7.072500607
1316_at 4.538567828
1320_at 3.82726054
1405_i_at 8.04002485
1431_at 3.046048794
1438_at 5.872994055
1487_at 8.521366149
1494_f_at 5.305843245
1552256_a_at 6.628606125
1552257_a_at 8.390679445
1552258_at 4.147059985
1552261_at 3.152933097
1552263_at 5.980672396
1552264_a_at 6.602524954
1552266_at 2.96938487

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM685525.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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