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Sample GSM685530 Query DataSets for GSM685530
Status Public on Sep 17, 2013
Title SCC_N55_expression
Sample type RNA
 
Source name Squamous cell carcinoma
Organism Homo sapiens
Characteristics tissue: Squamous cell carcinoma
type: SCC
Growth protocol Cell lines were cultured in 10% FCS + 90% GMEM + antibiotics, according to standard maintenance procedures
Extracted molecule total RNA
Extraction protocol TRIzol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Standard Affymetrix labelling protocol
 
Hybridization protocol Standard Affymetrix hybridisation protocol
Scan protocol Standard Affymetrix scanning protocol
Description N55
Data processing Data analysis was done using Bioconductor R packages. Background correction and normalisation were performed using Robust Microarray Analysis (RMA) provided by the Affy package
 
Submission date Mar 04, 2011
Last update date Sep 17, 2013
Contact name Ian Roberts
E-mail(s) ian.roberts@cantab.net
Phone 0044 1223 763 279
Organization name Hutchison MRC Research Centre
Department Cancer Cell Unit
Lab Coleman
Street address Hills Road
City Cambridge
ZIP/Postal code CB2 0XZ
Country United Kingdom
 
Platform ID GPL570
Series (2)
GSE27333 Gain of the oncostatin M receptor in cervical squamous cell carcinoma is associated with adverse clinical outcome
GSE27678 Gene expression analysis in a variety of normal, premalignant and squamous cell carcinomas of the cervix

Data table header descriptions
ID_REF
VALUE log 2 RMA normalized signal

Data table
ID_REF VALUE
1007_s_at 10.56381695
1053_at 7.28729315
117_at 6.348638884
121_at 6.75747233
1255_g_at 2.869648806
1294_at 7.420192667
1316_at 4.838134673
1320_at 4.097308
1405_i_at 6.966553461
1431_at 2.971976843
1438_at 5.204769798
1487_at 8.42615277
1494_f_at 4.745197708
1552256_a_at 7.78791286
1552257_a_at 8.422755203
1552258_at 3.827722202
1552261_at 7.509789164
1552263_at 5.397159927
1552264_a_at 5.909366161
1552266_at 3.16296921

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM685530.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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