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Sample GSM685534 Query DataSets for GSM685534
Status Public on Sep 17, 2013
Title normal_S98_303_expression
Sample type RNA
 
Source name normal uterine cervix
Organism Homo sapiens
Characteristics tissue: normal uterine cervix
type: Normal
Growth protocol Cell lines were cultured in 10% FCS + 90% GMEM + antibiotics, according to standard maintenance procedures
Extracted molecule total RNA
Extraction protocol TRIzol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Standard Affymetrix labelling protocol
 
Hybridization protocol Standard Affymetrix hybridisation protocol
Scan protocol Standard Affymetrix scanning protocol
Description S98_303
Data processing Data analysis was done using Bioconductor R packages. Background correction and normalisation were performed using Robust Microarray Analysis (RMA) provided by the Affy package
 
Submission date Mar 04, 2011
Last update date Sep 17, 2013
Contact name Ian Roberts
E-mail(s) ian.roberts@cantab.net
Phone 0044 1223 763 279
Organization name Hutchison MRC Research Centre
Department Cancer Cell Unit
Lab Coleman
Street address Hills Road
City Cambridge
ZIP/Postal code CB2 0XZ
Country United Kingdom
 
Platform ID GPL570
Series (2)
GSE27333 Gain of the oncostatin M receptor in cervical squamous cell carcinoma is associated with adverse clinical outcome
GSE27678 Gene expression analysis in a variety of normal, premalignant and squamous cell carcinomas of the cervix

Data table header descriptions
ID_REF
VALUE log 2 RMA normalized signal

Data table
ID_REF VALUE
1007_s_at 8.632145686
1053_at 5.653443936
117_at 4.886994083
121_at 8.608929332
1255_g_at 3.031074459
1294_at 7.834282033
1316_at 5.134590971
1320_at 3.902035974
1405_i_at 5.185972876
1431_at 3.334730243
1438_at 5.505885604
1487_at 6.945063407
1494_f_at 5.380166975
1552256_a_at 7.701147849
1552257_a_at 7.234829927
1552258_at 4.435427409
1552261_at 4.468882377
1552263_at 4.744339004
1552264_a_at 4.756897438
1552266_at 3.459474353

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM685534.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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