|
| Status |
Public on Sep 17, 2013 |
| Title |
SCC_11_04_expression |
| Sample type |
RNA |
| |
|
| Source name |
Squamous cell carcinoma
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: Squamous cell carcinoma
type: SCC
|
| Growth protocol |
Cell lines were cultured in 10% FCS + 90% GMEM + antibiotics, according to standard maintenance procedures
|
| Extracted molecule |
total RNA |
| Extraction protocol |
TRIzol extraction of total RNA was performed according to the manufacturer's instructions.
|
| Label |
biotin
|
| Label protocol |
Standard Affymetrix labelling protocol
|
| |
|
| Hybridization protocol |
Standard Affymetrix hybridisation protocol
|
| Scan protocol |
Standard Affymetrix scanning protocol
|
| Description |
11_04
|
| Data processing |
Data analysis was done using Bioconductor R packages. Background correction and normalisation were performed using Robust Microarray Analysis (RMA) provided by the Affy package
|
| |
|
| Submission date |
Mar 04, 2011 |
| Last update date |
Sep 17, 2013 |
| Contact name |
Ian Roberts |
| E-mail(s) |
ian.roberts@cantab.net
|
| Phone |
0044 1223 763 279
|
| Organization name |
Hutchison MRC Research Centre
|
| Department |
Cancer Cell Unit
|
| Lab |
Coleman
|
| Street address |
Hills Road
|
| City |
Cambridge |
| ZIP/Postal code |
CB2 0XZ |
| Country |
United Kingdom |
| |
|
| Platform ID |
GPL570 |
| Series (2) |
| GSE27333 |
Gain of the oncostatin M receptor in cervical squamous cell carcinoma is associated with adverse clinical outcome |
| GSE27678 |
Gene expression analysis in a variety of normal, premalignant and squamous cell carcinomas of the cervix |
|
