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Sample GSM69194 Query DataSets for GSM69194
Status Public on Feb 17, 2006
Title MDA-MB-231
Sample type genomic
 
Channel 1
Source name ATCC (HTB-26D)
Organism Homo sapiens
Characteristics ATCC catalogue number: HTB-26D
Extracted molecule genomic DNA
Label Cy3
 
Channel 2
Source name Pooled female genomic DNA
Organism Homo sapiens
Characteristics Novagen Catalogue Number: 70605-3
Extracted molecule genomic DNA
Label Cy5
 
 
Description pooled female genomic DNA competitively hybridized against MDA-MB-231 cell line genomic DNA
Data processing None
 
Submission date Aug 09, 2005
Last update date Feb 17, 2006
Contact name Ashleen Shadeo
E-mail(s) ashadeo@bccrc.ca
Organization name British Columbia Cancer Research Center
Street address 675 west 10th Ave
City Vancouver
State/province BC
ZIP/Postal code V6Z 2V9
Country Canada
 
Platform ID GPL2735
Series (1)
GSE3106 Breast Cancer Cell Lines

Data table header descriptions
ID_REF
Spot Mean Intensity (w595) average Cy3 intensity
Spot Mean Intensity (w685) average Cy5 intensity
Background Mean Intensity (w595) average background Cy3 intensity
Background Mean Intensity (w685) average background Cy5 intensity
Spot Normalized Intensity (w595)
Spot Normalized Intensity (w685)
Spot SNR (w595)
Spot SNR (w685)
Spot Ratio (w595)
Spot Ratio (w685)
Spot Log2 Ratio (w595)
VALUE

Data table
ID_REF Spot Mean Intensity (w595) Spot Mean Intensity (w685) Background Mean Intensity (w595) Background Mean Intensity (w685) Spot Normalized Intensity (w595) Spot Normalized Intensity (w685) Spot SNR (w595) Spot SNR (w685) Spot Ratio (w595) Spot Ratio (w685) Spot Log2 Ratio (w595) VALUE
1 6352.76 5477.41 1126.551 2012.391 5236.76 3466.41 133.2557 91.6316 0.8903753 1.123026 -0.1675146 0.1673918
2 5430.74 4540.14 1149.821 2025.893 4275.74 2520.14 133.198 59.0603 0.9999464 0.9999685 -7.74467E-05 -4.54305E-05
3 8910.25 5231.7 1168.842 2018.596 7739.25 3209.7 194.4341 60.6822 1.421098 0.7036213 0.507006 -0.5071288
4 6512.36 5745.74 1201.032 2039.048 5314.36 3705.74 171.7631 101.7767 0.845212 1.183034 -0.2426148 0.2424919
5 8044.39 4855.88 1214.844 2040.641 6832.39 2814.377 242.2203 74.1093 1.430804 0.6988485 0.5168256 -0.5169485
6 4478.24 3774.26 1189.451 2036.431 3292.24 1735.261 111.2798 52.307 1.118192 0.8942245 0.1611681 -0.161291
7 5952.65 4502.31 1170.681 2028.979 4782.65 2471.306 167.175 67.3877 1.140597 0.8766593 0.1897889 -0.1899117
8 6430.4 4986.52 1151.04 2032.6 5281.9 2950.022 135.7175 86.2655 1.055248 0.9475635 0.07758258 -0.07770546
9 10528.03 4923.18 1136.319 2018.149 9399.03 2901.178 204.2198 73.2059 1.909407 0.5236783 0.9331244 -0.9332472
10 7872.91 4694.82 1105.836 2005.909 6768.91 2688.817 162.8538 74.6468 1.483705 0.6739311 0.5692042 -0.569327
11 9641.71 5490.03 1100.267 2008.4 8539.71 3484.03 209.7668 96.3637 1.444612 0.6921683 0.5306824 -0.5308052
12 5803.62 4344.14 1099.667 2009.349 4706.62 2338.14 129.4151 55.2812 1.186393 0.8428195 0.2465816 -0.2467045
13 8895.51 6157.7 1131.323 2028.597 7764.51 4136.7 185.7393 82.9284 1.106241 0.9038848 0.1456664 -0.1457893
14 4717.44 4220.96 1161.767 2056.167 3558.94 2167.458 104.355 55.3715 0.967743 1.033244 -0.04730411 0.04718124
15 5304.24 4577.27 1174.294 2050.039 4131.24 2528.268 115.1474 86.851 0.9630456 1.038284 -0.05432393 0.05420106
16 8694.17 5668.25 1174.652 2046.326 7519.67 3620.75 220.5644 90.7411 1.224025 0.8169073 0.2916329 -0.2917558
17 6069.24 5008.09 1170.756 2045.022 4901.24 2964.091 145.1468 75.3987 0.9745508 1.026026 -0.03719063 0.03706776
18 6913.42 4497.75 1148.545 2029.127 5765.42 2468.748 147.7728 61.3677 1.376399 0.7264715 0.460899 -0.4610219
19 5530.11 5025.37 1130.113 2021.032 4404.61 3000.869 139.1785 87.3457 0.8650672 1.155881 -0.2091158 0.2089929
20 4637.41 4179.86 1126.089 2011.679 3513.91 2164.355 112.5746 60.8082 0.9568684 1.044987 -0.0636076 0.06348471

Total number of rows: 98208

Table truncated, full table size 10720 Kbytes.




Supplementary data files not provided

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