NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM69196 Query DataSets for GSM69196
Status Public on Feb 17, 2006
Title T47D
Sample type genomic
 
Channel 1
Source name Breast Cancer Cell LineT47D
Organism Homo sapiens
Characteristics ATCC: HTB-133D
Extracted molecule genomic DNA
Label Cy3
 
Channel 2
Source name Pooled female genomic DNA
Organism Homo sapiens
Characteristics Novagen Catalogue Number: 70605-3
Extracted molecule genomic DNA
Label Cy5
 
 
Description Competitive hybridization of differentially labeled pooled female genomic DNA and T47D genomic DNA
Data processing None
 
Submission date Aug 09, 2005
Last update date Feb 17, 2006
Contact name Ashleen Shadeo
E-mail(s) ashadeo@bccrc.ca
Organization name British Columbia Cancer Research Center
Street address 675 west 10th Ave
City Vancouver
State/province BC
ZIP/Postal code V6Z 2V9
Country Canada
 
Platform ID GPL2735
Series (1)
GSE3106 Breast Cancer Cell Lines

Data table header descriptions
ID_REF
Spot Mean Intensity (w595) Mean Spot Pixel Intensity - Cy3 channel
Spot Mean Intensity (w685) Mean Spot Pixel Intensity - Cy5 channel
Background Mean Intensity (w595) Median Background Pixel Intensity - Cy3 channel
Background Mean Intensity (w685) Median Background Pixel Intensity - Cy5 channel
Spot Normalized Intensity (w595) Spot Mean - Background Median
Spot Normalized Intensity (w685) Spot Mean - Background Median
Spot SNR (w595) Signal to noise ratio - Cy3
Spot SNR (w685) Signal to noise ratio - Cy5
Spot Ratio (w595) Cy3/Cy5
Spot Ratio (w685) Cy5/Cy3
Spot Log2 Ratio (w595) log2(Cy3/Cy5) (global mean set to "0")
VALUE log2(Cy5/Cy3) (global mean set to "0")

Data table
ID_REF Spot Mean Intensity (w595) Spot Mean Intensity (w685) Background Mean Intensity (w595) Background Mean Intensity (w685) Spot Normalized Intensity (w595) Spot Normalized Intensity (w685) Spot SNR (w595) Spot SNR (w685) Spot Ratio (w595) Spot Ratio (w685) Spot Log2 Ratio (w595) VALUE
1 5559.4 5465.05 1001.958 2079.113 4554.4 3377.05 132.532 58.0931 0.8459648 1.181846 -0.2413305 0.2410425
2 4382.57 3864.05 1041.814 2071.686 3344.57 1791.553 93.5421 27.61232 1.171036 0.8537746 0.2277849 -0.2280729
3 5533.44 4658.3 1068.968 2102.726 4465.94 2556.796 150.3546 51.6808 1.09566 0.9125101 0.1317996 -0.1320875
4 7575.03 5689.21 1084.9 2127.417 6496.53 3565.71 213.9863 89.23 1.142863 0.8748206 0.192653 -0.1929409
5 4322.42 4280.08 1071.132 2125.226 3251.42 2167.081 85.2058 48.0563 0.9411471 1.062321 -0.08750792 0.08721998
6 4390.64 3923.97 1047.852 2112.639 3346.64 1811.969 95.1273 39.9022 1.158555 0.8629721 0.2123263 -0.2126142
7 5096.04 4891 1052.265 2109.633 4045.04 2780 137.7223 71.2784 0.9127184 1.09541 -0.1317582 0.1314703
8 5543.51 4540.45 1060.452 2113.726 4484.51 2424.449 133.1209 47.3367 1.160275 0.8616928 0.2144664 -0.2147544
9 6375.88 4801.09 1055.551 2109.572 5322.88 2686.087 123.5117 47.3833 1.243042 0.8043177 0.3138747 -0.3141626
10 5486.12 5002.43 1058.056 2102.014 4424.12 2903.432 109.9493 51.4478 0.9558148 1.046019 -0.06519689 0.06490894
11 6878.87 5093.45 1070.186 2100.279 5812.87 2988.452 144.3746 51.2288 1.220121 0.8194274 0.2870241 -0.287312
12 6689.44 4292.39 1070.712 2069.423 5621.44 2242.392 121.0869 27.93969 1.572517 0.6357964 0.6530754 -0.6533633
13 8961.11 6502.7 1099.455 2079.864 7858.61 4412.7 142.147 55.9744 1.11712 0.8949801 0.1597846 -0.1600725
14 4876.96 4210.98 1108.719 2121.877 3770.96 2095.979 99.7672 46.4897 1.128557 0.8859101 0.1744799 -0.1747678
15 5562.58 4696.3 1092.094 2138.813 4470.58 2555.802 136.4853 45.0741 1.097225 0.9112079 0.13386 -0.1341479
16 7066.46 5268.08 1096.439 2143.053 5970.46 3122.081 157.322 47.649 1.199563 0.8334708 0.2625086 -0.2627965
17 4138.83 3662.59 1087.696 2122.232 3051.833 1543.094 77.7447 28.44569 1.240588 0.8059088 0.3110236 -0.3113115
18 5940.22 4340.93 1090.836 2114.255 4849.22 2225.933 106.3054 46.2573 1.366528 0.7316354 0.4505153 -0.4508033
19 5089.84 4728.49 1084.38 2111.94 4002.84 2615.485 98.1645 78.512 0.9600091 1.041449 -0.05887998 0.05859205
20 4640.6 4561.6 1070.615 2087.585 3582.6 2484.602 59.2616 26.93933 0.9044834 1.105383 -0.1448339 0.144546

Total number of rows: 98208

Table truncated, full table size 10758 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap