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Sample GSM692503 Query DataSets for GSM692503
Status Public on Aug 25, 2011
Title Ep300 wtHSC sample 1 replicate 1
Sample type RNA
Source name Sca-1+,Lin-,AA4.1+,c-Kit++ FLHSC from 15 embryos combined
Organism Mus musculus
Characteristics strain: C57BL/6
cell type: Ep300+/+ FLHSC
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy micro kit following manufacturer's protocol.
12ng of total RNA was amplified following the Ovation RNA amplification protocol (FLHSC).
Label Biotin
Label protocol 12 nanograms of total RNA was amplified and processed to produce biotinylated cDNA targets using the NuGen Ovation Biotin labeling system.
Hybridization protocol 3.75 micrograms of biotinylated material was hybridized according to the standard Affymetrix protocol.
Scan protocol Standard Affymetrix protocol
Description 14.5dpc fetal liver HSC
Data processing GCRMA probe summarization and normalization using the Bioconductor gcrma package (
Submission date Mar 16, 2011
Last update date Aug 25, 2011
Contact name Madeleine E. Lemieux
Phone 617-595-6695
Organization name Bioinfo
Street address 275 Main St., Suite 252
City Plantagenet
State/province ON
ZIP/Postal code K0B 1L0
Country Canada
Platform ID GPL1261
Series (1)
GSE27987 Differential pre-mRNA processing in Crebbp+/- mice

Data table header descriptions
VALUE log2 GCRMA-normalized intensity

Data table
1415670_at 8.457
1415671_at 8
1415672_at 10.534
1415673_at 7.769
1415674_a_at 7.889
1415675_at 9.973
1415676_a_at 11.427
1415677_at 7.498
1415678_at 11.877
1415679_at 10.874
1415680_at 9.064
1415681_at 9.163
1415682_at 8.496
1415683_at 8.799
1415684_at 6.843
1415685_at 8.791
1415686_at 11.085
1415687_a_at 9.968
1415688_at 10.854
1415689_s_at 6.033

Total number of rows: 45101

Table truncated, full table size 765 Kbytes.

Supplementary file Size Download File type/resource
GSM692503_P300_wtHSC_1_1.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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