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Sample GSM70 Query DataSets for GSM70
Status Public on Nov 10, 2001
Title 3T-8DLS
Sample type RNA
 
Channel 1
Source name 4 day old shoot
Organism Zea mays
Extracted molecule total RNA
 
Channel 2
Source name 8 day old leaf sheath
Organism Zea mays
Extracted molecule total RNA
 
 
Description One of duplicate hybridizations.
 
Submission date Jun 13, 2001
Last update date May 27, 2005
Contact name Yangrae Cho
E-mail(s) yacho@sequence.stanford.edu
Phone 650-812-1976
Fax 650-812-1975
Organization name Stanford University
Department Biological Sciences
Lab V. Walbot
Street address 385 Serra Mall
City Stanford University
State/province CA
ZIP/Postal code 94305-8221
Country USA
 
Platform ID GPL12
Series (1)
GSE141 Gene-expression profile comparisons distinguish seven organs of maize

Data table header descriptions
ID_REF
Dia. Feature size
F635 Median Arithmetic median from channel 1
F635 Mean Arithmetic mean calculated as the raw signal divided by the surface area
F635 SD Standard deviation calculated from the mean signal (Channel 1)
B635 Median Arithmetic median of background from channel 1
B635 Mean Arithmetic mean of background (channel 1)
B635 SD Background standard deviation calculated for the mean background signal (channel 1)
F532 Median Arithmetic median from channel 2
F532 Mean Arithmetic mean calculated as the raw signal divided by the surface area (channel 2)
F532 SD Standard deviation calculated from the mean signal (Channel 2)
B532 Median Arithmetic median of background from channel 2
B532 Mean Arithmetic mean of background (channel 2)
B532 SD Background standard deviation calculated for the mean background signal (channel 2)
Rgn Rē Regression root square
F Pixels Area for intensity measurement of a feature
B Pixels Area for background intensity measurement
Flags crude quality:(-)value=bad flagged
VALUE log ratio of PRE_VALUE
PRE_VALUE The calculated ratio between (mean intensity of channel 1-median background)/(mean intensity of ch 2-median background of ch2)

Data table
ID_REF Dia. F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD Rgn Rē F Pixels B Pixels Flags VALUE PRE_VALUE
707001A02.x1 140 8362 10208 6685 100 102 18 5045 6062 3986 99 100 19 0.89 156 894 0 0.2291703 1.695
707002E03.y1 120 115 360 627 105 108 24 113 355 735 103 105 21 0.725 120 642 -50 0.0051813 1.012
707002G11.y1 130 1533 1449 566 105 108 22 1337 1308 472 104 107 22 0.85 120 692 0 0.0476643 1.116
707003H06.x3 140 8261 8552 3976 105 107 22 8425 8282 3230 104 107 25 0.876 156 810 0 0.0141003 1.033
707004B03.y1 140 4111 4510 2239 105 108 25 3416 3742 1783 103 108 26 0.853 156 786 0 0.0827853 1.210
707004G10.x1 140 24583 24772 10611 104 106 21 18972 18927 8062 103 107 23 0.867 156 782 0 0.1172713 1.310
707001A04.x1 140 15954 16351 7102 104 106 19 9142 9878 4275 105 108 22 0.847 156 769 0 0.2206313 1.662
707002E04.y1 130 25244 23975 8504 106 121 224 19765 18357 4326 107 110 25 0.897 120 690 0 0.1166083 1.308
707003C01.x3 140 13401 13715 5252 107 120 211 20717 21436 8784 108 110 24 0.888 156 779 0 -0.1951793 0.638
707003H07.x2 150 4575 5111 2474 105 109 39 4913 5305 2161 106 109 24 0.899 156 867 0 -0.0163743 0.963
707004H03.x2 130 20007 21159 9873 104 108 46 14968 14304 5631 105 107 21 0.843 120 706 0 0.1711413 1.483
707004A11.x2 130 10752 11480 4526 103 121 233 9025 9091 3173 105 108 30 0.856 120 725 0 0.1024343 1.266
707001C09.x1 140 3931 3999 1481 102 116 220 2989 3229 1359 105 109 27 0.873 156 810 0 0.0958663 1.247
707002B05.y1 130 5221 5724 1885 103 135 317 6151 6323 1754 107 119 118 0.882 120 690 0 -0.0438323 0.904
707003C02.x2 150 25585 27060 14239 105 140 323 11978 12541 5169 108 121 117 0.887 156 900 0 0.3360593 2.168
707003H08.x4 150 5825 6389 2959 105 117 168 4578 5005 2044 109 121 195 0.881 156 868 0 0.1082273 1.283
707004G04.x2 140 8295 7934 2861 104 106 24 7893 7313 2812 108 110 24 0.857 156 770 0 0.0362303 1.087
707004D11.y1 140 7753 7609 2674 102 104 20 6240 6217 2299 106 108 25 0.864 156 763 0 0.0891983 1.228
707001E11.x1 140 21772 22005 9517 104 107 25 21028 20095 8278 108 111 26 0.875 156 758 0 0.0398113 1.096
707002F05.y1 140 16808 16781 6781 103 106 24 12399 12100 4789 107 111 32 0.881 156 890 0 0.1433273 1.391

Total number of rows: 5760

Table truncated, full table size 555 Kbytes.




Supplementary data files not provided
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