|
| Status |
Public on Apr 23, 2024 |
| Title |
RNAseq_pMIG-3 |
| Sample type |
SRA |
| |
|
| Source name |
U937 cells
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: U937 cells
cell type: pro-monocytic
genotype: WT
treatment: NA
time: NA
|
| Growth protocol |
GFP+ or GFP+mCherry+ U937 cells were sorted after infection. BM cells harvested from the patient.
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
RNA was extracted with Trizol
RNA-seq libraries were constructed by Illumina Stranded mRNA Sample Preparation Kit (NEB, Cat#E7770) according to the manufacturer’s protocol,
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
RNAseq1_SR_12samples_result_all.csv
|
| Data processing |
Sequenced reads were mapped to hg19 whole genome using STAR
Assembly: hg19
Supplementary files format and content: txt files with gene counts
|
| |
|
| Submission date |
Feb 08, 2023 |
| Last update date |
Apr 23, 2024 |
| Contact name |
Xaingyu Pan |
| E-mail(s) |
pangxueyu233@outlook.com
|
| Organization name |
Sichuan University
|
| Department |
State Key Laboratory of Biotherapy, West China Hospital, Sihcuan University.
|
| Lab |
Chen & Liu Lab
|
| Street address |
No.17 Renming road section3
|
| City |
Chengdu, Cihna |
| State/province |
Sichuan |
| ZIP/Postal code |
610041 |
| Country |
China |
| |
|
| Platform ID |
GPL24676 |
| Series (2) |
| GSE224815 |
Identifying STRN3-RARA as a new fusion gene for acute promyelocytic leukemia [RNA-seq] |
| GSE224816 |
Identifying STRN3-RARA as a new fusion gene for acute promyelocytic leukemia |
|
| Relations |
| BioSample |
SAMN33210181 |
| SRA |
SRX19313032 |
