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Sample GSM7056675 Query DataSets for GSM7056675
Status Public on Mar 25, 2024
Title MB_SHHb_T35
Sample type genomic
 
Source name tumor
Organism Homo sapiens
Characteristics tissue: medulloblastoma
cell line: --
Treatment protocol No treatment
Growth protocol Cell lines are cultured in 2D or 3D cultures and in serum- or free serum- media.
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted with phenol- chloroform and precipitated with isopropanol.
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation EPIC Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using iScan Platform using standard recommended Illumina setting
Description DNA from tumor tissue
medulloblastoma_35
formalin-fixed
Data processing GenomeStudio software v2.0
 
Submission date Feb 22, 2023
Last update date Mar 25, 2024
Contact name Evelina Miele
E-mail(s) evelina.miele@opbg.net
Organization name Ospedale Pediatrico Bambino Gesù
Street address Viale Baldelli 38
City Rome
ZIP/Postal code 00146
Country Italy
 
Platform ID GPL23976
Series (1)
GSE225810 Evaluating cell culture reliability in pediatric brain tumor primary cells through DNA methylation profiling

Supplementary file Size Download File type/resource
GSM7056675_200992280037_R02C01_Grn.idat.gz 7.0 Mb (ftp)(http) IDAT
GSM7056675_200992280037_R02C01_Red.idat.gz 7.1 Mb (ftp)(http) IDAT
Processed data are available on Series record

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