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Sample GSM7070433 Query DataSets for GSM7070433
Status Public on Nov 22, 2023
Title WT2 miRNA-seq
Sample type SRA
 
Source name lens capsules
Organism Rattus norvegicus
Characteristics tissue: lens capsules
treatment: saline is injected subcutaneously
Extracted molecule total RNA
Extraction protocol RNA was extracted using TRIzol reagent (ThermoFisher, USA)
 
Library strategy miRNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina NovaSeq 6000
 
Data processing The data from RNA-Seq were first filtered (Cutadapt and Fqtrim) and assessed for quality (FastQC), and then compared to the reference genome (miRDeep and HISAT2).
The data source for the reference genome is Ensembl database (http://asia.ensembl.org)
Supplementary files format and content: excel;gene count
 
Submission date Feb 28, 2023
Last update date Nov 22, 2023
Contact name Li Xinhui
E-mail(s) lixh257@mail2.sysu.edu.cn
Organization name Sun Yat-sen university
Street address Guangzhou
City Guangzhou
ZIP/Postal code 510275
Country China
 
Platform ID GPL25947
Series (2)
GSE226272 Transcriptome sequencing and microRNA–mRNA regulatory network construction in the lens from a Na2Se03-induced Sprague Dawley rat cataract model [miRNA]
GSE226274 Transcriptome sequencing and microRNA–mRNA regulatory network construction in the lens from a Na2Se03-induced Sprague Dawley rat cataract model
Relations
BioSample SAMN33481826
SRA SRX19522206

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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