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Sample GSM7084159 Query DataSets for GSM7084159
Status Public on Apr 20, 2024
Title DAY35_S1
Sample type SRA
 
Source name hiPSC-derived eye cells
Organism Homo sapiens
Characteristics cell type: induced pluripotent stem cells
time: Day 35
treatment: Ocular Differentiation
Extracted molecule total RNA
Extraction protocol NovaSeq Reagent Kits v1.5
Illumina Stranded Total RNA Prep with with Ribo-Zero Plus
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NovaSeq 6000
 
Data processing All the samples were sequenced on the NovaSeq 6000 System
Fastq files quality check was performed using FASTQC quality control tool.
Sequences were trimmed using Trimmomatic.
Assembly: hg38
Supplementary files format and content: csv file includes count values for each samples
Supplementary files format and content: csv file includes fpkm values for each samples
 
Submission date Mar 07, 2023
Last update date Apr 20, 2024
Contact name Burak Kahveci
E-mail(s) burakkahveci42@gmail.com
Organization name Izmir Biomedicine and Genome Center
Street address Izmir
City Izmir
ZIP/Postal code 33453
Country Turkey
 
Platform ID GPL24676
Series (1)
GSE226816 Generation of Anterior Eye Cells from hiPSCs in Microfluidic Platforms
Relations
BioSample SAMN33611723
SRA SRX19582542

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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