|
Status |
Public on Apr 20, 2024 |
Title |
DAY30_S2 |
Sample type |
SRA |
|
|
Source name |
hiPSC-derived eye cells
|
Organism |
Homo sapiens |
Characteristics |
cell type: induced pluripotent stem cells time: Day 30 treatment: Ocular Differentiation
|
Extracted molecule |
total RNA |
Extraction protocol |
NovaSeq Reagent Kits v1.5 Illumina Stranded Total RNA Prep with with Ribo-Zero Plus
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NovaSeq 6000 |
|
|
Data processing |
All the samples were sequenced on the NovaSeq 6000 System Fastq files quality check was performed using FASTQC quality control tool. Sequences were trimmed using Trimmomatic. Assembly: hg38 Supplementary files format and content: csv file includes count values for each samples Supplementary files format and content: csv file includes fpkm values for each samples
|
|
|
Submission date |
Mar 07, 2023 |
Last update date |
Apr 20, 2024 |
Contact name |
Burak Kahveci |
E-mail(s) |
burakkahveci42@gmail.com
|
Organization name |
Izmir Biomedicine and Genome Center
|
Street address |
Izmir
|
City |
Izmir |
ZIP/Postal code |
33453 |
Country |
Turkey |
|
|
Platform ID |
GPL24676 |
Series (1) |
GSE226816 |
Generation of Anterior Eye Cells from hiPSCs in Microfluidic Platforms |
|
Relations |
BioSample |
SAMN33611721 |
SRA |
SRX19582552 |