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Sample GSM7108016 Query DataSets for GSM7108016
Status Public on Nov 28, 2023
Title CMP (group C) MXIE
Sample type RNA
 
Source name CMP_MXIE_r3
Organism Mus musculus
Characteristics biological replicate: 3
cell sort information: FACS Sorted BM LKS-CD34+CD16/32-
pool: C
tissue: Bone Marrow
tissue: CMP
overexpression??: MXIE
genetic background: C57BL/6
Growth protocol Cell were FACS sorted from primiary receipent mice 16 weeks post transplantation of retrovirally overexpressed immature bone marrow cells.
Extracted molecule total RNA
Extraction protocol Performed by Ramaciotti Centre for Gene Function Analysis at the University of New South Wales, Sydney, Australia in accordance with the manufacturer’s instructions.
Label biotin
Label protocol Performed by Ramaciotti Centre for Gene Function Analysis at the University of New South Wales, Sydney, Australia in accordance with the manufacturer’s instructions.
 
Hybridization protocol Performed by Ramaciotti Centre for Gene Function Analysis at the University of New South Wales, Sydney, Australia in accordance with the manufacturer’s instructions.
Scan protocol Performed by Ramaciotti Centre for Gene Function Analysis at the University of New South Wales, Sydney, Australia in accordance with the manufacturer’s instructions.
Description Common Myeloid Progenitor MXIE overexpression rep 3
Data processing samples were RMA normalised in GenePattern using NormalizeAffymetrixST 2.2 (RMA, core probesets, controls included,Affymetrix_MoGene_1_1_st_v1.na33.2.mm9.transcript.chip).
 
Submission date Mar 20, 2023
Last update date Nov 28, 2023
Contact name Alistair Morgan Chalk
E-mail(s) achalk@svi.edu.au, alistair.chalk@gmail.com
Organization name St Vincent's Institute of Medical Research
Department Stem Cell Regulation Unit
Lab Walkley
Street address 9 Princes st, Fitzroy
City Melbourne
State/province VIC
ZIP/Postal code 3065
Country Australia
 
Platform ID GPL11533
Series (1)
GSE227775 Modeling myelodysplastic syndromes in mice by altered Hoxa1 spliceform expression (CMP)

Data table header descriptions
ID_REF
VALUE log2 RMA normalised signal using GenePattern module NormalizeAffymetrixST.

Data table
ID_REF VALUE
10338001 11.1317
10338002 3.5896
10338003 9.5635
10338004 8.937
10338005 1.7394
10338006 1.7849
10338007 2.0906
10338008 2.3077
10338009 5.3677
10338010 1.7228
10338011 3.2102
10338012 1.7438
10338013 1.5804
10338014 1.619
10338015 1.6037
10338016 4.265
10338017 11.7682
10338018 3.7529
10338019 2.792
10338020 5.3877

Total number of rows: 35556

Table truncated, full table size 552 Kbytes.




Supplementary file Size Download File type/resource
GSM7108016_CMP_MXIE_r3.CEL.gz 3.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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