NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM711458 Query DataSets for GSM711458
Status Public on Feb 16, 2012
Title normal mouse fallopian tube oviduct, biological rep3
Sample type RNA
 
Source name normal mouse oviduct
Organism Mus musculus
Characteristics disease state: normal
tissue: oviduct
Growth protocol We used a mouse genetics strategy to conditionally delete both Dicer and the Pten tumor suppressor in the female reproductive tract using anti-Müllerian hormone receptor type 2 (Amhr2-Cre). These Dicer-Pten DKO (Dicer flox/flox Pten flox/flox Amhr2 cre/+) mice universally develop high-grade serous epithelial cancers.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the mirVana miRNA Isolation Kit (ABI). RNA quality were inspected on a 2100 Bioanalyzer (Agilent).
Label biotin
Label protocol According to Illumina protocol.
 
Hybridization protocol According to Illumina protocol.
Scan protocol According to Illumina protocol.
Description normal mouse fallopian tube oviduct, biological rep3
Data processing The image data were compiled into a project using Beadstudio software gene expression module version 3.2.7. No normalization was used. The data was exported as txt files using the build-in function of export to GeneSpring GX format. The option of sample probe profile was chosen. Data were subsequently quantile normalized for the analysis.
 
Submission date Apr 19, 2011
Last update date Feb 16, 2012
Contact name Chad Creighton
E-mail(s) creighto@bcm.tmc.edu
Organization name Baylor College of Medicine
Department Biostatistics, Ducan Cancer Center
Street address One Baylor Plaza, Mail Stop: BCM305
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL6887
Series (2)
GSE28720 Gene expression analysis of ovarian tumors from mice with knockout of DICER and PTEN
GSE28979 Gene expression profiles of serous ovarian cancer in human and mouse

Data table header descriptions
ID_REF
VALUE 'signal' a measure of the abundance of a transcript

Data table
ID_REF VALUE
ILMN_2735294 985.0482
ILMN_2417611 42.5417
ILMN_2545897 81.113
ILMN_2762289 55.1474
ILMN_1248788 71.983
ILMN_2707227 76.1091
ILMN_2896528 4580.8792
ILMN_2721178 1144.4207
ILMN_1227723 432.6113
ILMN_2458837 44.9818
ILMN_3033922 1746.1019
ILMN_3092673 7384.0077
ILMN_1230777 5094.5289
ILMN_2730714 4953.473
ILMN_1246069 2119.4473
ILMN_1232042 44.7273
ILMN_1243193 944.2927
ILMN_2524361 46.9667
ILMN_1233188 396.8835
ILMN_2543688 3070.2562

Total number of rows: 45281

Table truncated, full table size 929 Kbytes.




Supplementary file Size Download File type/resource
GSM711458.txt.gz 705.6 Kb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap