|
| Status |
Public on Mar 04, 2024 |
| Title |
IBDU, SAMPLE 2 |
| Sample type |
RNA |
| |
|
| Source name |
FFPE IBDU
|
| Organism |
Homo sapiens |
| Characteristics |
disease classification: IBDU_CD
age group: Adult
tissue: Mucosal tissue biopsies
|
| Growth protocol |
Formalin fixed paraffin embedded tissue biopsies stored at room temperature
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted using MagMAX™ FFPE DNA/RNA Ultra Kit from Applied Biosystems
|
| Label |
biotin
|
| Label protocol |
FlashTag Biotin HSR
|
| |
|
| Hybridization protocol |
Genechip Fluidics Station 450
|
| Scan protocol |
Affymetrix GeneChip 7G scanner
|
| Data processing |
analysis was done using RStudio with R version 4.2.2. Preprocessing were performed using robust multichip average (RMA) algorithm. Lowly expressed probe sets were removed, and batch correction was performed using ComBat batch correction.
|
| |
|
| Submission date |
Mar 30, 2023 |
| Last update date |
Mar 04, 2024 |
| Contact name |
Jaslin P James |
| E-mail(s) |
lene.buhl.riis@regionh.dk, jaslin.pallikkunnath.james@regionh.dk, jaslin.pj@gmail.com
|
| Organization name |
Herlev hospital
|
| Department |
Department of Pathology
|
| Street address |
Borgmester Ib Juuls vej 1
|
| City |
Herlev |
| ZIP/Postal code |
2730 |
| Country |
Denmark |
| |
|
| Platform ID |
GPL19117 |
| Series (1) |
| GSE228622 |
Short Noncoding RNAs as predictive biomarkers for the development from Inflammatory Bowel Disease Unclassified to Crohn’s Disease or Ulcerative Colitis |
|
