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Sample GSM7134045 Query DataSets for GSM7134045
Status Public on Mar 04, 2024
Title IBDU, SAMPLE 22
Sample type RNA
 
Source name FFPE IBDU
Organism Homo sapiens
Characteristics disease classification: IBDU_IBDU
age group: Pediatric
tissue: Mucosal tissue biopsies
Growth protocol Formalin fixed paraffin embedded tissue biopsies stored at room temperature
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using MagMAX™ FFPE DNA/RNA Ultra Kit from Applied Biosystems
Label biotin
Label protocol FlashTag Biotin HSR
 
Hybridization protocol Genechip Fluidics Station 450
Scan protocol Affymetrix GeneChip 7G scanner
Data processing analysis was done using RStudio with R version 4.2.2. Preprocessing were performed using robust multichip average (RMA) algorithm. Lowly expressed probe sets were removed, and batch correction was performed using ComBat batch correction.
 
Submission date Mar 30, 2023
Last update date Mar 04, 2024
Contact name Jaslin P James
E-mail(s) lene.buhl.riis@regionh.dk, jaslin.pallikkunnath.james@regionh.dk, jaslin.pj@gmail.com
Organization name Herlev hospital
Department Department of Pathology
Street address Borgmester Ib Juuls vej 1
City Herlev
ZIP/Postal code 2730
Country Denmark
 
Platform ID GPL19117
Series (1)
GSE228622 Short Noncoding RNAs as predictive biomarkers for the development from Inflammatory Bowel Disease Unclassified to Crohn’s Disease or Ulcerative Colitis

Data table header descriptions
ID_REF
VALUE log2 scale, RMA signal

Data table
ID_REF VALUE
14q0_st 0.778768732
14qI-1_st 2.50980071
14qI-1_x_st 1.926405217
14qI-2_st 0.854291487
14qI-3_x_st 1.511281928
14qI-4_st 1.709362598
14qI-4_x_st 1.884407492
14qI-5_st 0.894717137
14qI-6_st 1.161709683
14qI-7_st 2.284667116
14qI-8_st 1.902150375
14qI-8_x_st 2.041958507
14qI-9_x_st 1.150084975
14qII-1_st 5.264410924
14qII-1_x_st 5.196322514
14qII-10_st 1.26045874
14qII-11_st 1.153288154
14qII-12_st 1.680839528
14qII-12_x_st 1.748973503
14qII-13_st 1.145688743

Total number of rows: 36353

Table truncated, full table size 984 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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