NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM718 Query DataSets for GSM718
Status Public on Nov 28, 2001
Title SAGE_HMEC-B41
Sample type SAGE
Anchor NlaIII
Tag Count 1430
Tag Length 10
 
Source name Normal epithelial cells
Organism Homo sapiens
Extracted molecule total RNA
 
Description Cell culture HMEC-B41 of normal human mammary epithelial cells derived from normal mammoplasty specimen from 51 yo female
Sex: Female
Organ: Breast
Cell_type: Epithelium
Cell_line: HMEC-B41
Library treatment: non-normalized
Tissue description: cell culture HMEC-B41 of normal human mammary epithelial cells derived from normal mammoplasty specimen
Tissue supplier: C. Marcelo Aldaz
Sample type: Cell line
Producer: Aldaz Laboratory
Clones generated to date: 0
Sequences generated to date: 144

This library represents a Cancer Genome Anatomy Project library, which was either produced through CGAP funding, or donated to CGAP.
The Cancer Genome Anatomy Project (CGAP: http://cgap.nci.nih.gov) is an interdisciplinary program established and administered by the National Cancer Institute (NCI: http://www.nci.nih.gov) to generate the information and technological tools needed to decipher the molecular anatomy of the cancer cell.
Keywords = mammary gland
Keywords = epithelium
Keywords = normal
Keywords = SAGE
Keywords = cell line
Keywords = CGAP
Keywords = non-normalized
Keywords = SAGE library method
Keywords = cell line
 
Submission date Nov 28, 2001
Last update date May 28, 2005
Contact name C Marcelo Aldaz
E-mail(s) maldaz@odin.mdacc.tmc.edu
Phone 512-237-9530
URL http://sciencepark.mdanderson.org/ggeg
Organization name M.D. Anderson Cancer Center
Department Science Park Research Division, Carcinogenesis
Street address
City Smithville
State/province TX
ZIP/Postal code 78957
Country USA
 
Platform ID GPL4
Series (1)
GSE25748 SAGE analysis of normal human mammary epithelial cells, breast carcinoma (malignant effusion), and breast adenocarcinoma (malignant pleural effusion)

Data table header descriptions
TAG Ten base SAGE tag,
COUNT Absolute tag count
TPM Tags per million, or (1000000*COUNT)/(Total tags)

Data table
TAG COUNT TPM
GATCTCTTGG 26 18181.8
GCCCCCAATA 16 11188.8
GATCCCAACT 15 10489.5
CTGGGTTAAT 13 9090.91
CTTCCTTGCC 13 9090.91
GCCCCTGCTG 11 7692.31
GTGAAGGCAG 10 6993.01
AAGGTGGAGG 9 6293.71
CCTGGTCCCA 9 6293.71
GGACCACTGA 9 6293.71
TACCATCAAT 9 6293.71
AGGGCTTCCA 8 5594.41
GCATAATAGG 8 5594.41
AAAAAAAAAA 7 4895.1
AAAGCACAAG 7 4895.1
AGCAGATCAG 7 4895.1
AGCTCTCCCT 7 4895.1
CCTAGCTGGA 7 4895.1
GAAAAATGGT 7 4895.1
TTGGGGTTTC 7 4895.1

Total number of rows: 955

Table truncated, full table size 19 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap