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Sample GSM721894 Query DataSets for GSM721894
Status Public on Sep 09, 2011
Title Lung_Cancer_Cell_Line_NCI-H1395 and Blood_Cell_Line_NCI-BL1396
Sample type genomic
 
Source name Patient-matched Lung cancer and Blood cell lines
Organism Homo sapiens
Characteristics dna mix: 50% Lung Cancer
cell mix: 50% Lung Cancer
Extracted molecule genomic DNA
Extraction protocol DNA extraction was performed using the DNeasy Tissue Kit (Qiagen, Hilden, Germany).
Label biotin
Label protocol Cytogenetics Copy Number Assay User Guide (P/N 702607 Rev2)
 
Hybridization protocol Cytogenetics Copy Number Assay User Guide (P/N 702607 Rev2)
Scan protocol Cytogenetics Copy Number Assay User Guide (P/N 702607 Rev2)
Description Lung cancer cell line H-1395 and patient-matched blood cell line BL1395 were obtained from ATCC and cultured according to their recommendations.
Data processing CNCHP files for copy number analysis produced using Affymetrix Genotyping Console 3.1 and default settings contain Log R and Allelic Difference.
 
Submission date May 10, 2011
Last update date Sep 09, 2011
Contact name Anders Isaksson
E-mail(s) anders.isaksson@medsci.uu.se
Organization name Uppsala University
Street address Akademiska sjukhuset ing61 3tr
City Uppsala
ZIP/Postal code 75185
Country Sweden
 
Platform ID GPL6801
Series (1)
GSE29172 SNP array analysis of lung cancer NCI-H1395, diluted to different tumor cell concentrations

Data table header descriptions
ID_REF
VALUE CN STATE
CHROMOSOME
POSITION
LOG2 RATIO
SMOOTH SIGNAL
LOH
ALLELE DIFFERENCE

Data table
ID_REF VALUE CHROMOSOME POSITION LOG2 RATIO SMOOTH SIGNAL LOH ALLELE DIFFERENCE
CN_473963 2.000000 1 51586 0.200186 2.488172 nan nan
CN_473964 2.000000 1 51659 -0.028257 2.488187 nan nan
CN_473965 2.000000 1 51674 -0.131680 2.488190 nan nan
CN_473981 2.000000 1 52771 0.426887 2.488420 nan nan
CN_473982 2.000000 1 52788 0.269973 2.488423 nan nan
CN_497981 2.000000 1 62627 0.267409 2.490565 nan nan
CN_502615 2.000000 1 75787 0.157872 2.493700 nan nan
CN_502613 2.000000 1 75849 0.103619 2.493715 nan nan
CN_502614 2.000000 1 76175 0.228450 2.493797 nan nan
CN_502616 2.000000 1 76192 -0.072823 2.493801 nan nan
CN_502843 2.000000 1 88453 0.324606 2.497042 nan nan
CN_466171 2.000000 1 218557 0.750904 2.822132 nan nan
CN_468414 2.000000 1 218926 0.118508 2.822322 nan nan
CN_468412 2.000000 1 219009 -0.342879 2.822365 nan nan
CN_468413 2.000000 1 219024 0.305086 2.822373 nan nan
CN_470565 2.000000 1 219470 0.018797 2.822603 nan nan
CN_468424 2.000000 1 225521 0.428862 2.825746 nan nan
CN_468425 2.000000 1 225579 0.531262 2.825776 nan nan
CN_460512 2.000000 1 346294 -0.475895 2.178183 nan nan
CN_460513 2.000000 1 346393 0.576599 2.178185 nan nan

Total number of rows: 1813441

Table truncated, full table size 114292 Kbytes.




Supplementary file Size Download File type/resource
GSM721894_CN_mix50.zip.gz 8.1 Mb (ftp)(http) ZIP
GSM721894_PA097_mix50_110329_GenomeWideSNP_6_.CEL.gz 30.5 Mb (ftp)(http) CEL
GSM721894_PA097_mix50_110329_GenomeWideSNP_6_.CN5.CNCHP.gz 34.8 Mb (ftp)(http) CNCHP
Processed data included within Sample table
Processed data provided as supplementary file

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