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Sample GSM72398 Query DataSets for GSM72398
Status Public on Nov 10, 2005
Title germ cell tumors (GCT) and normal controls 177B 2
Sample type RNA
 
Source name germ cell tumor
Organism Homo sapiens
Characteristics pure GCT (Seminoma)
Extracted molecule total RNA
Extraction protocol Frozen tissue from a germ cell tumor was minced and homogenized in RLT buffer (Qiagen).Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).
Label biotin
Label protocol Approximately 12 ug of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Adult Male Germ Cell Tumor
Data processing RMA (robust multi-array)
 
Submission date Aug 29, 2005
Last update date Oct 12, 2005
Contact name James Korkola
E-mail(s) korkolaj@mskcc.org
Phone 212-639-8281
Organization name Memorial Sloan-Kettering
Department Cell Biology
Lab Chaganti
Street address 1275 York Ave
City New York
State/province NY
ZIP/Postal code 10021
Country USA
 
Platform ID GPL96
Series (1)
GSE3218 Expression Profiling of Adult Male Germ Cell Tumors
Relations
Reanalyzed by GSM462674
Reanalyzed by GSE18155

Data table header descriptions
ID_REF
VALUE RMA-calculated Signal intensity

Data table
ID_REF VALUE
1007_s_at 9.499623639
1053_at 8.593758019
117_at 6.900788164
121_at 9.357583394
1255_g_at 5.289790171
1294_at 8.00335831
1316_at 5.928604156
1320_at 5.473901169
1405_i_at 8.632612223
1431_at 4.875449734
1438_at 7.673447584
1487_at 8.141675365
1494_f_at 7.465162928
1598_g_at 9.515435365
160020_at 8.75369788
1729_at 7.608091698
177_at 6.023232081
1773_at 6.568582628
179_at 9.509708726
1861_at 6.06884948

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM72398.CEL.gz 3.6 Mb (ftp)(http) CEL
GSM72398.EXP.gz 504 b (ftp)(http) EXP

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