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Sample GSM72499 Query DataSets for GSM72499
Status Public on Nov 10, 2005
Title germ cell tumors (GCT) and normal controls Norm1C10 2
Sample type RNA
 
Source name normal testis control
Organism Homo sapiens
Characteristics normal testis
Extracted molecule total RNA
Extraction protocol Frozen tissue from normal testis was minced and homogenized in RLT buffer (Qiagen).Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).
Label biotin
Label protocol Approximately 12 ug of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Normal Testis Specimen
Data processing RMA (robust multi-array)
 
Submission date Aug 29, 2005
Last update date Oct 12, 2005
Contact name James Korkola
E-mail(s) korkolaj@mskcc.org
Phone 212-639-8281
Organization name Memorial Sloan-Kettering
Department Cell Biology
Lab Chaganti
Street address 1275 York Ave
City New York
State/province NY
ZIP/Postal code 10021
Country USA
 
Platform ID GPL96
Series (1)
GSE3218 Expression Profiling of Adult Male Germ Cell Tumors
Relations
Reanalyzed by GSM462690
Reanalyzed by GSE18155

Data table header descriptions
ID_REF
VALUE RMA-calculated Signal intensity

Data table
ID_REF VALUE
1007_s_at 8.859006511
1053_at 6.789027522
117_at 6.899685612
121_at 9.221043766
1255_g_at 8.532770283
1294_at 7.44767045
1316_at 5.867917984
1320_at 6.350314206
1405_i_at 5.293597024
1431_at 4.819340382
1438_at 7.290107424
1487_at 7.543115883
1494_f_at 7.130068118
1598_g_at 10.85499197
160020_at 8.683867776
1729_at 7.347879291
177_at 6.299228494
1773_at 6.626403868
179_at 9.357655635
1861_at 6.820777106

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM72499.CEL.gz 3.6 Mb (ftp)(http) CEL
GSM72499.EXP.gz 503 b (ftp)(http) EXP

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