|
| Status |
Public on Dec 31, 2011 |
| Title |
WX9-TR1 prostate tumour |
| Sample type |
genomic |
| |
|
| Source name |
WX9-TR1
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: prostate tumor
individual: WX9
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Fresh frozen samples were digested by Proteinase K and RNaseA. DNA was extracted from these samples using phenol/chroloform.
|
| Label |
Biotin
|
| Label protocol |
standard Affymetrix protocol
|
| |
|
| Hybridization protocol |
DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
|
| Scan protocol |
The Arrays were then washed using Affymetrix fluidics stations, and scanned using the Gene Chip Scanner 3000 7G.
|
| Description |
SNP genotype data from prostate cancer patient at diagnosis
|
| Data processing |
CEL files and CHP files generated by Affymetrix Genechip Operating Software. Very weakly hybridized SNPs were filtered by the same software. The signal intensity data from SNP array were analyzed by in-house software- GOLF and commerical software-Partek.
|
| |
|
| Submission date |
May 26, 2011 |
| Last update date |
Dec 31, 2011 |
| Contact name |
Xueying Mao |
| E-mail(s) |
x.mao@qmul.ac.uk
|
| Organization name |
Queen Mary
|
| Street address |
Charterhouse Square
|
| City |
London |
| ZIP/Postal code |
EC1M 6BQ |
| Country |
United Kingdom |
| |
|
| Platform ID |
GPL6801 |
| Series (1) |
| GSE29569 |
High-resolution genome-wide copy-number analysis suggests a monoclonal origin of multi-focal prostate cancer |
|
