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Sample GSM73380

Query DataSets for GSM73380

Status

Public on Dec 01, 2005

Title

AML_t(9;11)_LIB7

Sample type

SAGE

Anchor

NlaIII

Tag Count

84229

Tag Length

Source name

bone marrow, CD15+ myeloid progenitor cells

Organism

Homo sapiens

Characteristics

Acute Myeoloid Leukemia (AML) patient sample with chromosomal translocation t(9;11). This library was constructed from a treatment-related AML cells with t(9;11).

Extracted molecule

total RNA

Description

SAGE analysis of gene expression in leukemic myeloid progenitor cells isolated from bone marrow

Submission date

Sep 06, 2005

Last update date

Nov 19, 2008

Contact name

San Ming Wang

E-mail(s)

swang1@northwestern.edu

Phone

224-364-7491

Fax

224-364-5003

Organization name

ENH Research Institute, Northwestern University

Department

Center for Functional Genomics

Street address

1001 University Place

City

Evanston

State/province

ZIP/Postal code

60062

Country

USA

Platform ID

GPL4

Series (1)

GSE3255

Gene Expression Profiles with Common Translocations in Acute Myeloid Leukemia (AML) using SAGE

Data table header descriptions
TAG	Ten-base SAGE tag
COUNT	Absolute tag count
TPM	tags per million

Data table
TAG	COUNT	TPM
AAGCGGCCGC	3379	40116.82
AAAGCGGCCG	1644	19518.22
TACCTGCAGA	1000	11872.40
ATGTAAAAAA	882	10471.45
GTTGTGGTTA	630	7479.61
CCCATCGTCC	617	7325.27
AAGACAGTGG	521	6185.52
CCTGTAATCC	450	5342.58
CACCTAATTG	421	4998.28
CAAGTTCTTT	415	4927.04
GTGAAACCCC	387	4594.62
GCCATAAAAT	364	4321.55
CAATAAATGT	355	4214.70
ATAATTCTTT	339	4024.74
TTGGTCCTCT	335	3977.25
TAGGTTGTCT	330	3917.89
AATTAAATTA	325	3858.53
CCCTGGGTTC	314	3727.93
GTGGCCACGG	308	3656.70
TGCACGTTTT	299	3549.85

Total number of rows: 24514

Table truncated, full table size 457 Kbytes.

Supplementary data files not provided