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Sample GSM742476 Query DataSets for GSM742476
Status Public on Oct 25, 2012
Title 90697_08335T1
Sample type RNA
 
Source name 08335T1
Organism Homo sapiens
Characteristics tissue: Normal
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalized using quantile normalization
 
Submission date Jun 15, 2011
Last update date Oct 25, 2012
Contact name Joanna Dawn Holbrook
E-mail(s) Joanna_Holbrook@sics.a-star.edu.sg
Organization name Singapore Institute of Clinical Sciences
Street address 30 Medical Drive
City Singapore
ZIP/Postal code 117609
Country Singapore
 
Platform ID GPL6947
Series (2)
GSE29998 Deep sequencing of gastric carcinoma reveals somatic mutations relevant to personalized medicine [Illumina mRNA expression array data]
GSE29999 Deep sequencing of gastric carcinoma reveals somatic mutations relevant to personalized medicine

Data table header descriptions
ID_REF
VALUE AVG_Signal = quantile normalized
Detection Pval Illumina assigned detection p-value

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 -12.50799 0.8923706
ILMN_2055271 11.43381 0.1757493
ILMN_1736007 -7.335446 0.7275204
ILMN_2383229 41.57552 0
ILMN_1806310 61.50785 0
ILMN_1779670 8.117282 0.2356948
ILMN_2321282 11.96266 0.1716621
ILMN_1671474 -5.032936 0.6485013
ILMN_1772582 -3.184803 0.5694823
ILMN_1735698 5.800889 0.2929155
ILMN_1653355 15.18327 0.1253406
ILMN_1717783 -1.833036 0.5163488
ILMN_1705025 -3.611324 0.5790191
ILMN_1814316 -14.87392 0.9373297
ILMN_2359168 -1.32609 0.4972752
ILMN_1731507 12.36319 0.1662125
ILMN_1787689 -3.122245 0.5681199
ILMN_1745607 614.0705 0
ILMN_2136495 -7.450969 0.7288828
ILMN_1668111 -2.631906 0.5476839

Total number of rows: 48803

Table truncated, full table size 1425 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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