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Sample GSM742487 Query DataSets for GSM742487
Status Public on Oct 25, 2012
Title 90708_08259T2
Sample type RNA
 
Source name 08259T2
Organism Homo sapiens
Characteristics tissue: Tumor
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalized using quantile normalization
 
Submission date Jun 15, 2011
Last update date Oct 25, 2012
Contact name Joanna Dawn Holbrook
E-mail(s) Joanna_Holbrook@sics.a-star.edu.sg
Organization name Singapore Institute of Clinical Sciences
Street address 30 Medical Drive
City Singapore
ZIP/Postal code 117609
Country Singapore
 
Platform ID GPL6947
Series (2)
GSE29998 Deep sequencing of gastric carcinoma reveals somatic mutations relevant to personalized medicine [Illumina mRNA expression array data]
GSE29999 Deep sequencing of gastric carcinoma reveals somatic mutations relevant to personalized medicine

Data table header descriptions
ID_REF
VALUE AVG_Signal = quantile normalized
Detection Pval Illumina assigned detection p-value

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 -10.70153 0.843962
ILMN_2055271 7.823769 0.2075984
ILMN_1736007 12.2553 0.1221167
ILMN_2383229 116.6882 0
ILMN_1806310 187.7002 0
ILMN_1779670 23.21763 0.02578019
ILMN_2321282 8.983665 0.1818182
ILMN_1671474 -16.2491 0.9470828
ILMN_1772582 -8.627037 0.7856174
ILMN_1735698 11.72465 0.1289009
ILMN_1653355 -0.1135989 0.4477612
ILMN_1717783 -2.105326 0.5345997
ILMN_1705025 1.648971 0.3772049
ILMN_1814316 -2.363552 0.5440977
ILMN_2359168 -13.84102 0.9145183
ILMN_1731507 -0.5679045 0.4667571
ILMN_1787689 28.92299 0.005427408
ILMN_1745607 536.1476 0
ILMN_2136495 -8.676586 0.7856174
ILMN_1668111 -18.81551 0.9742198

Total number of rows: 48803

Table truncated, full table size 1424 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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