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Sample GSM743839 Query DataSets for GSM743839
Status Public on May 22, 2012
Title Biotin-HSR labeled synthetic miRNA spike in, 625 attomoles
Sample type other
Source name Synthetic oligos, 625 attomoles
Organism synthetic construct
Characteristics miRNA spike in amount: 625 attomoles
Extracted molecule other
Extraction protocol The synthetic miRNAs were obtained from the Ambion mirVana miRNA Reference Panel v9.1 (Lot number 072307).
Label biotin-HSR
Label protocol The Genisphere FlashTag Biotin-HSR Kit was used. The protocol is available for download at the product website ( or by contacting the kit manufacturer.
Hybridization protocol The quantity of miRNA spike in varied from 5000 to 4.88 attomoles.
Scan protocol Standard Affymetrix protocol.
Description Synthetic human, rat, and mouse miRNAs.
miRNA-1_0_2Xgain library file used for scanning.
Data processing Prior to analysis, raw signal intensity values were Robust Multichip Average (RMA) background corrected, quantile normalized, median polish summarized, and log2 transformed separately for FlashTag biotin-only and FlashTag biotin-HSR chip data.
Submission date Jun 16, 2011
Last update date May 23, 2012
Contact name John S. Kaddis
Organization name City of Hope
Department Diabetes and Cancer Discovery Science
Street address 1500 East Duarte Road
City Duarte
State/province CA
ZIP/Postal code 91010-3000
Country USA
Platform ID GPL8786
Series (1)
GSE30045 Influence of RNA Labeling on Expression Profiling of MicroRNAs

Data table header descriptions
VALUE Processed signal intensity values, log2 transformed

Data table
AFFX-BioB-5_at 7.53037
AFFX-BioB-M_at 8.142925
AFFX-BioB-3_at 8.44023
AFFX-BioC-5_at 9.121664
AFFX-BioC-3_at 8.098567
AFFX-BioDn-5_at 9.927544
AFFX-BioDn-3_at 11.07678
AFFX-CreX-5_at 12.544
AFFX-CreX-3_at 13.57164
AFFX-r2-Ec-c1-bioB-5_at 7.67411
AFFX-r2-Ec-c1-bioB-M_at 7.913474
AFFX-r2-Ec-c1-bioB-3_at 7.484784
AFFX-r2-Ec-c1-bioC-5_at 9.581508
AFFX-r2-Ec-c1-bioC-3_at 9.441811
AFFX-r2-Ec-c1-bioD-5_at 10.7899
AFFX-r2-Ec-c1-bioD-3_at 10.93356
AFFX-r2-P1-c1-cre-5_at 12.79556
AFFX-r2-P1-c1-cre-3_at 14.35177
AFFX-r2-Ec-c2-bioB-5_at 7.540136
AFFX-r2-Ec-c2-bioB-M_at 7.849326

Total number of rows: 7788

Table truncated, full table size 188 Kbytes.

Supplementary file Size Download File type/resource
GSM743839.CEL.gz 214.1 Kb (ftp)(http) CEL
Processed data included within Sample table

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