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Sample GSM75 Query DataSets for GSM75
Status Public on Nov 10, 2001
Title 6B-EMB
Sample type RNA
 
Channel 1
Source name 4 day old shoot
Organism Zea mays
Extracted molecule total RNA
 
Channel 2
Source name Embryo 2 weeks after pollination
Organism Zea mays
Extracted molecule total RNA
 
 
Description One of duplicate hybridizations.
 
Submission date Jun 13, 2001
Last update date May 27, 2005
Contact name Yangrae Cho
E-mail(s) yacho@sequence.stanford.edu
Phone 650-812-1976
Fax 650-812-1975
Organization name Stanford University
Department Biological Sciences
Lab V. Walbot
Street address 385 Serra Mall
City Stanford University
State/province CA
ZIP/Postal code 94305-8221
Country USA
 
Platform ID GPL12
Series (1)
GSE141 Gene-expression profile comparisons distinguish seven organs of maize

Data table header descriptions
ID_REF
Dia. Feature size
F635 Median Arithmetic median from channel 1
F635 Mean Arithmetic mean calculated as the raw signal divided by the surface area
F635 SD Standard deviation calculated from the mean signal (Channel 1)
B635 Median Arithmetic median of background from channel 1
B635 Mean Arithmetic mean of background (channel 1)
B635 SD Background standard deviation calculated for the mean background signal (channel 1)
F532 Median Arithmetic median from channel 2
F532 Mean Arithmetic mean calculated as the raw signal divided by the surface area (channel 2)
F532 SD Standard deviation calculated from the mean signal (Channel 2)
B532 Median Arithmetic median of background from channel 2
B532 Mean Arithmetic mean of background (channel 2)
B532 SD Background standard deviation calculated for the mean background signal (channel 2)
Rgn Rē Regression root square
F Pixels Area for intensity measurement of a feature
B Pixels Area for background intensity measurement
Flags crude quality:(-)value=bad flagged
VALUE log ratio of PRE_VALUE
PRE_VALUE The calculated ratio between (mean intensity of channel 1-median background)/(mean intensity of ch 2-median background of ch2)

Data table
ID_REF Dia. F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD Rgn Rē F Pixels B Pixels Flags VALUE PRE_VALUE
707001A02.x1 140 2379 2495 1529 75 78 23 2107 2261 1060 90 91 14 0.697 156 902 0 0.0472753 1.115
707002E03.y1 120 4422 4283 1239 75 79 44 2295 2326 628 91 93 16 0.94 120 636 0 0.2748503 1.883
707002G11.y1 140 915 945 552 73 75 15 676 627 224 91 92 15 0.726 156 824 0 0.2113883 1.627
707003H06.x3 140 4176 4227 1487 72 74 19 2820 2955 1008 91 93 18 0.919 156 773 0 0.1616673 1.451
707004B03.y1 140 409 613 941 72 75 38 394 454 273 91 92 16 0.634 156 765 0 0.1731863 1.490
707004G10.x1 140 4934 5194 2119 71 74 17 5043 5262 2415 90 92 28 0.929 156 796 0 -0.0039263 0.991
707001A04.x1 140 3052 3119 1323 71 78 94 5166 5082 2157 87 97 176 0.863 156 768 0 -0.2146703 0.610
707002E04.y1 140 8191 7677 3384 73 76 18 5707 5588 2350 89 90 14 0.949 156 792 0 0.1408223 1.383
707003C01.x3 150 25257 25808 10457 75 83 62 2290 2148 704 91 99 108 0.914 156 858 0 1.0972573 12.510
707003H07.x2 140 797 1024 1116 72 82 81 1010 1074 498 91 99 112 0.577 156 790 0 -0.0141253 0.968
707004H03.x2 140 9075 9064 3909 73 81 69 10214 10379 4561 91 92 13 0.923 156 796 0 -0.0584893 0.874
707004A11.x2 140 6729 6547 3052 73 80 40 5143 4956 2251 90 93 29 0.931 156 790 0 0.1238523 1.330
707001C09.x1 140 1150 1298 1419 71 77 37 1017 1083 448 90 93 29 0.603 156 808 0 0.0920183 1.236
707002B05.y1 140 4079 4073 1821 72 74 22 3036 2921 1080 91 93 19 0.861 156 824 0 0.1504493 1.414
707003C02.x2 130 3544 3591 1459 69 75 38 4868 5222 2309 92 94 22 0.892 120 675 0 -0.1630433 0.687
707003H08.x4 130 703 931 1081 69 75 31 832 860 285 91 94 34 0.415 120 727 0 0.0496063 1.121
707004G04.x2 130 2887 2894 1139 67 73 37 3479 3360 1076 89 91 17 0.851 120 724 0 -0.0634863 0.864
707004D11.y1 140 4149 4091 1347 68 77 96 2991 2946 1021 89 93 35 0.913 156 821 0 0.1486033 1.408
707001E11.x1 140 8072 7990 3039 69 74 39 6456 6734 3117 89 91 18 0.937 156 793 0 0.0762763 1.192
707002F05.y1 130 5747 5800 1614 69 74 43 5156 5263 1554 88 91 22 0.925 120 774 0 0.0441483 1.107

Total number of rows: 5760

Table truncated, full table size 539 Kbytes.




Supplementary data files not provided
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