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Sample GSM7502371 Query DataSets for GSM7502371
Status Public on Sep 27, 2023
Title SAMPLE 2 amniotic fluid fetal cells
Sample type genomic
Source name amniotic fluid fetal cells
Organism Homo sapiens
Characteristics cell: amniotic fluid fetal cells
diagnosis: arr[hg19](1-22)x2,(XN)x1
diagnosis: Fetal omphalocele (contents are liver, most intestinal canal and part of gastric bubble) abdominal wall defect about 2.6 cm, where a mass 4.6 cm × 4.3 cm × 3.8 cm bulging, containing liver, most intestinal canal and part of gastric bubble echoes, the mass boundary is clear, and umbilical cord echoes are observed on the surface of the mass.
Extracted molecule genomic DNA
Extraction protocol Genomic DNA of fetal cells in amniotic fluid or cord blood sampling was extracted with using the QIAamp DNA extraction kit (Qiagen, Dusseldorf, Germany)
Label Biotin
Label protocol As per manufacturer (Affymetrix)
Hybridization protocol DNA was processed as follows. Restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer`s instructions.
Scan protocol The arrays were then washed using Affymetrix Fluidics Stations, and scanned using the GeneChip Scanner 750K
Description Hybridized to CytoScan 750K
Data processing The array image was acquired using Affymetrix GeneChip® Command Console (AGCC version Data processing and analysis (CEL file generation, smoothing and segmentation) were used Chromosome Analysis Suite (version 3.3).
Copy number variation status (CNV)
Submission date Jun 21, 2023
Last update date Sep 27, 2023
Contact name Yanting Que
Organization name Fujian Medical University
Street address No. 88, Jiaotong Road, Taijiang District, Fuzhou City, Fujian Province
City Fuzhou
ZIP/Postal code 350100
Country China
Platform ID GPL18637
Series (1)
GSE235430 Ultrasonographic characteristics, genetic features, and maternal and fetal outcomes in fetuses with omphalocele: a single tertiary center experience

Supplementary file Size Download File type/resource
GSM7502371_R3091_CytoScan750K_Array_.CEL.gz 17.4 Mb (ftp)(http) CEL
GSM7502371_R3091_CytoScan750K_Array_.cy750K.cychp.gz 26.0 Mb (ftp)(http) CYCHP
Processed data provided as supplementary file

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