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Sample GSM753977 Query DataSets for GSM753977
Status Public on Dec 31, 2011
Title 0h K562_2 induced by hemin into erythroid differentiation
Sample type RNA
 
Source name K562 cells 0h induction
Organism Homo sapiens
Characteristics k562 cells: 0h hemin
Extracted molecule total RNA
Extraction protocol Trizol
Label Cy3
Label protocol Cy3
 
Hybridization protocol SAM
Scan protocol The BeadArray Reader
Data processing The raw intensity of Illumina MicroRNA expression array was scanned and extracted using BeadArray Reader(illumina,San Diego,CA), with the data corrected by background subtraction and normalized in GenomeStudio V2010.2 module(illumina,San Diego,CA). We normalized the intenstiydata with average normalization algorithm. Individual MicroRNAs were examined using the detection p-value metric provided by Illumina inwhich the signal generated from each MicroRNA is compared to negative controls. A threshold of p<0.05 was used as a cutoff.MicroRNA that did not reach this threshold were eliminated from the analysis.
 
Submission date Jul 03, 2011
Last update date Dec 31, 2011
Contact name Jia Yu
E-mail(s) j-yu@ibms.pumc.edu.cn
Organization name Peking Union Medical College
Department Biochemistry
Lab Yu
Street address Dong Dan San Tiao #5
City Bei Jing
ZIP/Postal code 100005
Country China
 
Platform ID GPL8179
Series (2)
GSE30380 Expression profile of hemin induced erythroid differentiation, over-expressing and knocking-down GATA-1, EKLF and NF-E2 in K562s
GSE30809 Systematical identification of GATA-1, EKLF, and NF-E2 regulated miRNAs by ChIP-on chip and microRNA microarray in K562 cells into erythroid differentiation

Data table header descriptions
ID_REF
VALUE miRNA expression value after normalized to background
K562_0h_2.Detection Pval

Data table
ID_REF VALUE K562_0h_2.Detection Pval
ILMN_3167304 -0.6559689 0.5378219
ILMN_3168038 -1.771116 0.6011632
ILMN_3167890 4224.637 3.68E-38
ILMN_3167526 -2.886263 0.6619425
ILMN_3167209 -1.771116 0.6011632
ILMN_3168219 3.80462 0.2909204
ILMN_3167464 30.56815 4.84E-06
ILMN_3167213 -4.00141 0.7187669
ILMN_3167057 4.919767 0.2381985
ILMN_3168313 1.574325 0.4098718
ILMN_3166972 1672.065 3.68E-38
ILMN_3168149 13.84094 0.0225671
ILMN_3168527 -7.346852 0.8562034
ILMN_3167562 -0.6559689 0.5378219
ILMN_3168099 56.21654 2.05E-16
ILMN_3168017 30.56815 4.84E-06
ILMN_3167545 -1.771116 0.6011632
ILMN_3167951 9.380356 0.08727083
ILMN_3167172 6.034914 0.1911897
ILMN_3167994 -1.771116 0.6011632

Total number of rows: 1145

Table truncated, full table size 35 Kbytes.




Supplementary file Size Download File type/resource
GSM753977_K562_0h_2_raw.txt.gz 12.6 Kb (ftp)(http) TXT
Processed data included within Sample table

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